G1634939 (LOC106571589)


Basic Information

Item Value
gene id G1634939
gene name LOC106571589
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50577670 ~ 50582425 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1870535
TGGAAATCTTTTATTTTACATCTAAATTAAACACATAGGTCTGTCGGTTTATCCAAAAACACATTCACTATGAATAACTAAACCAGATTCAACTAAATCAGTTAAATCATTTCAACAAGATCACAGTAATAACAAGCCAGACAAGATAAGCATTGAACAACATTTAAAATAATTAGAAAGGACCATGGTGACATTTGTCCCATGCATAAAAAGCATTTTGACACAAGTCAAGACAGTACATAAGGCAGTAATTTAATACTGCAACTAGagcttgaatttaaaaaaaatgtattactaaCTTTACCACACTGCAGAGTATTGTGATGTGGTCTTCCACAGTTCAGTGCTGTTTTGTGAGGAAAATGTCACCCTCTGGGCCACATAAAATCTGAGATCAAAGATCATGGGGAAGTCTAAGTCATTGACTTTCCAACAAAACAAACCAACATAAGTGTCAACAGGTCAGTCTAGAAACACAGGAAGACACGTCTTATGTGCCGATTAGAGGAAAGTAATATTAATAAATGCTTATAGGTTTACTAAATTTGATCAATTACCTGGATGAGTTGAACCTCTGCTATCAACAACCTCAACTTGTATAGATTGTGCATTTGGCCCCAGCTTCTTCCTGCAGTCCTCCAGCTGTACTCGAACTCTCTTGAGAGGCAGCAGTATCCTCCGAGCTCCACTGTTACAGCCAGGACTCAGTAATTTCCTGCAGTCCTTCAGCAGTACGGTCACCCTCTTGAGGGGCGAATTGGGATCAGGTTGGTGGGGAAGACACAGGCTGGGACTGTCCTCACAATACGCTACCTCCTCGAGTTTCATAGACTCTGCATTTGGCCCCAGCAGGTTAATGCAGTCTTCCAGCAGCAGTGCAAGAGGCGGCAACGTGCACTGAGCTCCACTGTTACAGTCAGGACCCAGTGTGACCGTAGGTTCAGGATCAGGTTGGTAGGGAAGAGACAGGCTGGCACTGTCCTCACAATCCATGATATTGAATTAGCTGTCCTTTTTTGTAGGGTCGTTTCACGTTTGCAGCTACAGTAGTTATGTTATTATTAGGTGCGAAATGATAGGCAAATTAAAGTTTGGAACCTTTTTGACTAGGCCACGAAATTAATAGCATTCTCCGCATGCTCCGAAACGATGTTTCCTTGTGGATAATCATGTCGGTTGGCATGGCTTGTGATGCATTACCGCCACCACCTGGACTGGAG
>TU1870537
TGGAAATCTTTTATTTTACATCTAAATTAAACACATAGGTCTGTCGGTTTATCCAAAAACACATTCACTATGAATAACTAAACCAGATTCAACTAAATCAGTTAAATCATTTCAACAAGATCACAGTAATAACAAGCCAGACAAGATAAGCATTGAACAACATTTAAAATAATTAGAAAGGACCATGGTGACATTTGTCCCATGCATAAAAAGCATTTTGACACAAGTCAAGACAGTACATAAGGCAGTAATTTAATACTGCAACTAGagcttgaatttaaaaaaaatgtattactaaCTTTACCACACTGCAGAGTATTGTGATGTGGTCTTCCACAGTTCAGTGCTGTTTTGTGAGGAAAATGTCACCCTCTGGGCCACATAAAATCTGAGATCAAAGATCATGGGGAAGTCTAAGTCATTGACTTTCCAACAAAACAAACCAACATAAGTGTCAACAGGTCAGTCTAGAAACACAGGAAGACACGTCTTATGTGCCGATTAGAGGAAAGTAATATTAATAAATGCTTATAGGTTTACTAAATTTGATCAATTACCTGGATGAGTTGAACCTCTGCTATCAACAACCTCAACTTGTATAGATTGTGCATTTGGCCCCAGCTTCTTCCTGCAGTCCTCCAGCTGTACTCGAACTCTCTTGAGAGGCAGCAGTATCCTCCGAGCTCCACTGTTACAGCCAGGACTCAGTAATTTCCTGCAGTCCTTCAGCAGTACGGTCACCCTCTTGAGGGGCGAATTGGGATCAGGTTGGTGGGGAAGACACAGGCTGGGACTGTCCTCACAATcCTCCTCGAGTTTCATAGACTCTGCATTTGGCCCCAGCAGGTTAATGCAGTCTTCCAGCAGCAGTGCAAGAGGCGGCAACGTGCACTGAGCTCCACTGTTACAGTCAGGACCCAGTGTGACCGTAGGTTCAGGATCAGGTTGGTAGGGAAGAGACAGGCTGGCACTGTCCTCACAATCCTAGAATAATAACAACAGATATTATGTAGGCTTGTCAAGTTCAATATCTGTATAGAACAAACACTAGATTTCTGAAAGGGTGTAGCAAGAGGGACATTATTGAATTGCGGTGGCACATGGCATTTTGGAAAAATGTACATCAACTAATATGGCAGCTTAATGACtaaatattttacctttatgACAACATTGTGCCACCAGCAAGGTAGTAATACATTTTAGGTAAATCAAAAAACTAATTTTATGGAGACCAGAGATGCTCAAATTGAAGGTCATTAAGCCTTTAAAGATCAATAACTAAAGTAATATGATTAGTAACTTTTATCACAATGTCATTTCATTTAAATTGAGTAACACCAATTGACACTTTGGTTATAGACACCAAATTGTCAATGGAATTATCAAATTTATGACATAAAAGGATGTGATTATCTTATTTTTTTCTAGACCCCTCCC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106571589

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1870535 False 1220 lncRNA 0.42 3 50577670 50582425
TU1870537 True 1440 lncRNA 0.39 2 50577670 50579211

Neighbor

gene id symbol gene type direction distance location
LOC118936464 adf1 coding upstream 48327 50526941 ~ 50529343 (+)
heatr4 heatr4 coding upstream 51307 50520395 ~ 50526363 (+)
LOC118941376 NA coding upstream 60998 50514922 ~ 50516672 (+)
LOC110498081 NA coding upstream 139887 50436698 ~ 50437783 (+)
LOC110498080 LOC106571921 coding upstream 199557 50357625 ~ 50378113 (+)
LOC110498087 LOC106571300 coding downstream 77547 50659972 ~ 50680974 (+)
LOC110498383 LOC106570236 coding downstream 1359967 51942392 ~ 51992547 (+)
LOC110498384 LOC106570052 coding downstream 1421700 52004125 ~ 52035886 (+)
tfb2m tfb2m coding downstream 1525217 52107642 ~ 52118171 (+)
LOC110498094 LOC106569575 coding downstream 1536043 52118468 ~ 52150151 (+)
G1634828 NA non-coding upstream 168622 50408773 ~ 50409048 (+)
G1634827 NA non-coding upstream 170143 50407321 ~ 50407527 (+)
G1634821 NA non-coding upstream 181397 50396069 ~ 50396273 (+)
G1634802 LOC106571863 non-coding upstream 197472 50378224 ~ 50380198 (+)
G1634794 NA non-coding upstream 225379 50352090 ~ 50352291 (+)
G1634979 NA non-coding downstream 99223 50681648 ~ 50683147 (+)
G1634983 NA non-coding downstream 101102 50683527 ~ 50684117 (+)
G1634990 ush2a non-coding downstream 113800 50696225 ~ 50696968 (+)
G1635004 NA non-coding downstream 148148 50730573 ~ 50730784 (+)
LOC110498078 LOC106572417 other upstream 322418 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 410284 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 1399268 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 1877102 48699057 ~ 48700568 (+)
LOC110498046 LOC106574720 other upstream 1899515 48588944 ~ 48678169 (+)
G1634948 NA other downstream 24961 50607386 ~ 50610479 (+)
hnrnpua hnrnpu other downstream 1992508 52561723 ~ 52576154 (+)
G1637065 NA other downstream 2168175 52750600 ~ 52755474 (+)
G1637178 NA other downstream 2334912 52917337 ~ 52918478 (+)
G1637730 NA other downstream 2847579 53430004 ~ 53430560 (+)

Expression


Co-expression Network