G1634979


Basic Information

Item Value
gene id G1634979
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50681648 ~ 50683147 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1870588
cctgagccccatgctctaccacctgagccccatgctctaccacctgagctccatgctctaccacctgagctccATACTCAATCAACTGAGCTCCACGGGAATGTGTGTTGTAACATGCACCTTTGTTAGTCTGATATAAATCCGTATTATTTAGTTTAATGATTTCTCAATTTGAGCGTCACTATTTCTATATAGCCAacactttctcgttctgaacttctaacgcgAGTGGGATGGGTGTGACGGGTATCACGACAATGACCACACGAGCAGCTGCTCAAAGATTTGACATCTCTAAGCAGTTATACCTACGACACCACCAAAAGAGCAGCTATGCGGGTGTCCACTATTGCCATTTAATGCTTGATCTGAATGAATCTAGGCCATAGTCTTTGGACAGACTGTCATGTGATCAACAATTTCAGTGGGTAACGCAGGGAGGAAGCACCAGCTTGGTGTGGATActcttgtcagtgtgtgtgtgtgtcctcgacGATGTCTTTAACACACTTGGCAGCAGCGCTGACCTCAGGAGAGTAACCTTCCCTTTAGAGACGTTAGCAACTTTGTTGTCTGAAAATGGCATTTGATAGCAGTGTGATTTATGAGTGTAATAAAGTCATGTTGCTGCATCTGAATGTGTGAGTTGCCAAGGGCCATACTGTCTGCTACAAGCACTTTTTAAAACTTTGACAATAGTTGTGAATGTGCCTGTGAACGTGCAGCTACTATTGCCCTTGTCAAAATGGCCTCCTTGAGTTGGGGAACAGTCGTAACTGCCAGTTTGGTGTGTCCCTTTTTAAGGGACATAAAAACAAAACTAACAGCTTTATGGCTCGCTGAAATACCACCCCcttaggcctgtgtgtgtgtctgtgatgtgaaTTGGTTGACATGAAGGACCTAATACTTGTTGAATGGCAGGCCTTTGTTTTGCAGCTCCAGTTCTACTGCTTGGTAGAGGGGTTTGGGTGGCCAGTTACTACAATGGGACTCCCCTAGAGGGATCTGTGGATGTGTGTAAACTCAAGGTTCAGACAACGGTGATAAATGTGTGCCTATCTGTCACCTACTACACATGTCTAAACTTCATACAGTTTAGTGTGGTTTTAATATTGGTTTCTCCACAAAAACTCTGTTGTTGACGAGCATTCTGTTTATCTGTTGGTAGATGATGACATTTTCATAAGGCCTTTGTCAGTGTAATGTCTCGATGTACCACCTGTCATAGGAATTGTTACACTGCATTGAGATGAAAtaggtgtgtgttctgtaacTATTAACTGCTGTCCTCTCTGacgtctcctctagtctactgaTGGAGTAAAACACAATAACCCAGTATATCAGCCTTCTGTCCTCTCTGACGTGTCCTCTAGTCTGTACTGATGGAGTAAAACACAATAACCCAGTATATCAGCCTTCTGTCCTCTCTGACGTCTCCTCTAGTCTGTACTGATGGAGTAAAACACAATAACCCAGTATATCAACCTTCTGTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1870588 True 1500 lncRNA 0.44 1 50681648 50683147

Neighbor

gene id symbol gene type direction distance location
LOC110498087 LOC106571300 coding upstream 674 50659972 ~ 50680974 (+)
LOC118936464 adf1 coding upstream 152305 50526941 ~ 50529343 (+)
heatr4 heatr4 coding upstream 155285 50520395 ~ 50526363 (+)
LOC118941376 NA coding upstream 164976 50514922 ~ 50516672 (+)
LOC110498081 NA coding upstream 243865 50436698 ~ 50437783 (+)
LOC110498383 LOC106570236 coding downstream 1259245 51942392 ~ 51992547 (+)
LOC110498384 LOC106570052 coding downstream 1320978 52004125 ~ 52035886 (+)
tfb2m tfb2m coding downstream 1424495 52107642 ~ 52118171 (+)
LOC110498094 LOC106569575 coding downstream 1435321 52118468 ~ 52150151 (+)
hnrnpua hnrnpu coding downstream 1878576 52561723 ~ 52576154 (+)
G1634939 LOC106571589 non-coding upstream 99223 50577670 ~ 50582425 (+)
G1634828 NA non-coding upstream 272600 50408773 ~ 50409048 (+)
G1634827 NA non-coding upstream 274121 50407321 ~ 50407527 (+)
G1634821 NA non-coding upstream 285375 50396069 ~ 50396273 (+)
G1634983 NA non-coding downstream 380 50683527 ~ 50684117 (+)
G1634990 ush2a non-coding downstream 13078 50696225 ~ 50696968 (+)
G1635004 NA non-coding downstream 47426 50730573 ~ 50730784 (+)
G1635008 ush2a non-coding downstream 52070 50735217 ~ 50735472 (+)
G1635009 NA non-coding downstream 52695 50735842 ~ 50736113 (+)
G1634948 NA other upstream 71169 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 426396 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 514262 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 1503246 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 1981080 48699057 ~ 48700568 (+)
G1637065 NA other downstream 2067453 52750600 ~ 52755474 (+)
G1637178 NA other downstream 2234190 52917337 ~ 52918478 (+)
G1637730 NA other downstream 2746857 53430004 ~ 53430560 (+)
G1638710 NA other downstream 3491649 54174796 ~ 54175130 (+)

Expression


Co-expression Network