G1634990 (ush2a)


Basic Information

Item Value
gene id G1634990
gene name ush2a
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 50696225 ~ 50696968 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1870601
CTTCTCTGAGGTGCGGGGTAAATAGAGGTAGCTGTGGAAGCCAATGTAGACTCTCAGGTTGTTGTCTGTCAGTGAGTAGTCTCTCAGAAGACCgttcagagagaaagaggcactCCAGTCCAGCCACACCAGAGTCAGGTTACTGTACACCTCAAATGGAGAGATATACTGAGGagctggagaagagagggagagagggagagggagagttagtGTAGTAACAGTAGTCCAGTTGGAGGCAGTACTACCAATGTTGTTATAACAGGGCTAgggctagaggtcaggggttagatgTCAGGGCTAGATGTCTTACCCTCAGTGAGTGTAGTAACAGTAGTCCAGTTGGAGGCGGTACTACCCATGTTGTTATAACAGGAAGCTCTGAGCTGGTAGCTAGAGTAGGGCTGCAGACCTGTTACGTTGTAGTTCCTGCCCCTCCCAAAGAACCGCGTTTCTATTGGTCCCTCCACACAGAGCGGCGGGACTGGCTGGGGAGGCTGGGGGCAGGAGGAACGAATGTGCAG

Function

symbol description
ush2a Acts upstream of or within eye photoreceptor cell development; response to auditory stimulus; and sensory perception of light stimulus. Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be active in basement membrane. Is expressed in eye and photoreceptor cell. Used to study Usher syndrome type 2 and Usher syndrome type 2A. Human ortholog(s) of this gene implicated in Usher syndrome (multiple); nonsyndromic deafness; and retinitis pigmentosa (multiple). Orthologous to human USH2A (usherin).

NR:

description
PREDICTED: LOW QUALITY PROTEIN: usherin

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1870601 True 524 lncRNA 0.52 2 50696225 50696968

Neighbor

gene id symbol gene type direction distance location
LOC110498087 LOC106571300 coding upstream 15251 50659972 ~ 50680974 (+)
LOC118936464 adf1 coding upstream 166882 50526941 ~ 50529343 (+)
heatr4 heatr4 coding upstream 169862 50520395 ~ 50526363 (+)
LOC118941376 NA coding upstream 179553 50514922 ~ 50516672 (+)
LOC110498081 NA coding upstream 258442 50436698 ~ 50437783 (+)
LOC110498383 LOC106570236 coding downstream 1245424 51942392 ~ 51992547 (+)
LOC110498384 LOC106570052 coding downstream 1307157 52004125 ~ 52035886 (+)
tfb2m tfb2m coding downstream 1410674 52107642 ~ 52118171 (+)
LOC110498094 LOC106569575 coding downstream 1421500 52118468 ~ 52150151 (+)
hnrnpua hnrnpu coding downstream 1864755 52561723 ~ 52576154 (+)
G1634983 NA non-coding upstream 12108 50683527 ~ 50684117 (+)
G1634979 NA non-coding upstream 13078 50681648 ~ 50683147 (+)
G1634939 LOC106571589 non-coding upstream 113800 50577670 ~ 50582425 (+)
G1634828 NA non-coding upstream 287177 50408773 ~ 50409048 (+)
G1635004 NA non-coding downstream 33605 50730573 ~ 50730784 (+)
G1635008 ush2a non-coding downstream 38249 50735217 ~ 50735472 (+)
G1635009 NA non-coding downstream 38874 50735842 ~ 50736113 (+)
G1635012 NA non-coding downstream 41502 50738470 ~ 50738781 (+)
G1635013 NA non-coding downstream 43500 50740468 ~ 50740785 (+)
G1634948 NA other upstream 85746 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 440973 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 528839 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 1517823 49160705 ~ 49178402 (+)
G1632650 arhgef10 other upstream 1995657 48699057 ~ 48700568 (+)
G1637065 NA other downstream 2053632 52750600 ~ 52755474 (+)
G1637178 NA other downstream 2220369 52917337 ~ 52918478 (+)
G1637730 NA other downstream 2733036 53430004 ~ 53430560 (+)
G1638710 NA other downstream 3477828 54174796 ~ 54175130 (+)

Expression


Co-expression Network