G1636602


Basic Information

Item Value
gene id G1636602
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52659308 ~ 52661396 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1872364
acagGGAGATTATTGTCCAGGCGATAAAAAAGTCATGATTATTCTTTGGATTTCAGCATAGAATTACACAGAACAATTAAATTAAATCAAAACCCAAACTTGCGCTCAGATTGTTAAGTCTTAATATGCAAATATATACATAATCAAGCCTACACGCATTCGCTCACAGGAATACACTTCATTACAACACAATCAGACAAATGATTGATTATAATAATAACTCAAGACTCCAGGACGAGGCACAAACCAGAGTTGGTCTCAAGTGAGTCCTATTCTCTGTGCACTATAtggggagtagggtgccatttaatgACAAAAACCGGTATACAAATGGTCTGAAGATCGGGCCCAATTCCATTTCTGTCCCTTCCTCCAGCTCAAACCCCTTTAGTATTGGACAGAAATGGAACGTGGCTCCTGAGTTGGGCGTAAAGATTCTTTACTCTAGTTGACGTCTGTGTTGGGGACAAAGATTCTCTGCTCTAGTTGACGATAAAGATTCTCTGCTCTAGTTGATATGTGTTAGTTTCCTCTACTAACGTGAACTCCCATGGTCCCATGTGGCAGTGGGTCTGATGTAGTGTGAAGAAAGTCTTATAATATACAGGTCTCTCTATGGAGGGAGTTTAAGGGCTTGCAGTTATTGAGTCTCGCATTGCCAGACTGCGTTTAATAACTAAAAGCCTCTGagggggacagactggtagactgAAGGCCACATAAAGGCAGGTGTCATATTGCTCTGAGCTCTGGGCCAGGGTTGCCAAAGATATACAGGAAATGCATGTAAACAAATGTATACTCTTGAAATATTATTTCCCCCATAACGGTTTGTTGTGTCCTTGGGCCTTTAAAAATATATGCTCATAGTAGCActtgacaacaaaaaaacatgcctTCTGTGGAATGATGAAAGGGTAACTGTATAGACAAATCCTTAATCAGGTATAGACAGTCTAAGggtcaggggtgtattcattagttgcAGACCGTAGAAAAAGTGGTTTTCCATTTACTCCACACGAGTTTCTATTGGAccaattcaggtaggtcccttcCCGCTTTGTTTCGTTTGCTTCTGGTTCCTAGCGAATACACCCCTGATGTGGTTCTGAGCGCAAACAGTCACAACCATATAAAGTCCATGATGAAATTGAAATGAAAGCCAGAGGATGCATGTATGACAAATGACTTCCTCCCGTTACACAGCATTCAGTTATGTatgcactactgtaagtcgcaCTGGATAAGAGTGTGCTAAATGACAAAATAATATTTACAGAAATGaggaaacattgcctttaaaaggtgcaCAGCCGACAGTGTGAACAGATTGAATCCTGGCCTCACTGCACCTATTTTGAGTCGTAAGCGAAGAGTCCATCGGCAATGTGAAAAAACCCATAAAAGTGACTTCATAATGAAATGTGTTTGAATCAGCTACTTCCTGatgtgagagacagaaacagagtgaGGCACGGAAATAAATAGATGAGCCTGAAGCGATCTCAAAACACTCTTCTCTGTGCAGAGGTGAGAAGACGAAGGCCAAATCCATCCGATACAccacctgctctctcttcatTACAACACTGCGCGTTCACACACATACTCAGTTCCCCTCCTATTACCACAAGTATGATCACTCGATAAACACGACGACAAACTTAAAAAACACTAGCAATAGCTATAGAAAGAGCAATGTAAAGTGTCTGACCAACTTGGGGATGGTACATGACAATAAATAAGCACTTGCTACGTTCCATTTCTCTATCAATTGGCCAGTCATCAGCCCATAGACAACTCCTCCTTACTTTCTCCCATCTCAAGTGGTGTATAGAAAGCTAAAAAGCAAGACTAGAATGTCAATGATCGAATCCATTTACAGTTATATAACAGTGGCTATAGCAGCACCATTTCTCATAAAATCACTTGTGCAAGCAACAATTTTTTTCAGTACAATTTAGAAGGCTTTATCTATTTCACATGATAAAGGCATATGTACAAccatttatatacagtatatcacaagtgagtacacccctcacatt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1872364 True 2051 lncRNA 0.41 2 52659308 52661396

Neighbor

gene id symbol gene type direction distance location
LOC110498100 LOC106568224 coding upstream 12416 52612596 ~ 52646892 (+)
LOC110498099 LOC106568712 coding upstream 59232 52584118 ~ 52600076 (+)
hnrnpua hnrnpu coding upstream 83196 52561723 ~ 52576154 (+)
LOC110498094 LOC106569575 coding upstream 509157 52118468 ~ 52150151 (+)
tfb2m tfb2m coding upstream 541137 52107642 ~ 52118171 (+)
LOC110498105 LOC106567684 coding downstream 133924 52795320 ~ 52835776 (+)
LOC110498109 1433b coding downstream 384849 53046245 ~ 53061764 (+)
LOC110498110 LOC106566892 coding downstream 405421 53066817 ~ 53097965 (+)
LOC110498111 NA coding downstream 445285 53106681 ~ 53113452 (+)
LOC110498114 LOC106566507 coding downstream 598334 53259730 ~ 53342222 (+)
G1636452 NA non-coding upstream 24272 52304685 ~ 52635036 (+)
G1636483 NA non-coding upstream 269214 52388786 ~ 52390094 (+)
G1636468 NA non-coding upstream 304065 52349604 ~ 52355243 (+)
G1636460 NA non-coding upstream 330119 52323997 ~ 52329189 (+)
G1636442 NA non-coding upstream 367515 52288911 ~ 52291793 (+)
G1636601 NA non-coding downstream 318 52661714 ~ 52663784 (+)
G1636620 NA non-coding downstream 13205 52674601 ~ 52674995 (+)
G1636629 NA non-coding downstream 20884 52682280 ~ 52685726 (+)
G1636658 NA non-coding downstream 60184 52721580 ~ 52722677 (+)
G1637054 LOC105030512 non-coding downstream 75046 52736442 ~ 52736745 (+)
G1634948 NA other upstream 2048829 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 2404056 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 2491922 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 3480906 49160705 ~ 49178402 (+)
G1637065 NA other downstream 89204 52750600 ~ 52755474 (+)
G1637178 NA other downstream 255941 52917337 ~ 52918478 (+)
G1637730 NA other downstream 768608 53430004 ~ 53430560 (+)
G1638710 NA other downstream 1513400 54174796 ~ 54175130 (+)
G1638780 NA other downstream 1578860 54240256 ~ 54240751 (+)

Expression


Co-expression Network