G1636629


Basic Information

Item Value
gene id G1636629
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 52682280 ~ 52685726 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1872392
AAAACACACGTTCTGTACCGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACAACATAaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaacacacgttctgtaatgtaaccacaacataaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaccgtaaccacaacataaaaacacacgttctgtaatGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACATCATAAAACACACGTTCTGTACCGTAACCACAACataaaacacacgttctgtaatGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACATCATAaaaacacacgttctgtaatgtaaccacatcataaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaacataaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaatgtaaccacaacATAAAAACACACGTTCTGTACCGTAACCACATCATAaaaacacacgttctgtaatataaccacaacataaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaccgtaaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaacgtaaccacaacataaaaacacacgttctgtaatat
>TU1872394
AAAACACACGTTCTGTACCGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACAACATAaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatgtaaccacatcataaaacacacgttctgtaatgtaaccacaacataaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaccgtaaccacaacataaaaacacacgttctgtaatGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACATCATAAAACACACGTTCTGTACCGTAACCACAACataaaacacacgttctgtaatGTAACCACAACATAAAAACACACGTTCTGTACCGTAACCACATCATAaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaatgtaaccacatcataaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatgtaaccacaacataaaaacacacgttctgtaatGTAACCACAACATAAAACACACGTTCTGTACCGTAACCACATCATaaaacacacgttctgtaatgtaaccac

Function

NR:

description
PREDICTED: uncharacterized protein LOC106592361

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1872392 False 874 lncRNA 0.35 4 52682280 52684869
TU1872394 True 615 lncRNA 0.36 3 52682280 52685726

Neighbor

gene id symbol gene type direction distance location
LOC110498100 LOC106568224 coding upstream 35388 52612596 ~ 52646892 (+)
LOC110498099 LOC106568712 coding upstream 82204 52584118 ~ 52600076 (+)
hnrnpua hnrnpu coding upstream 106168 52561723 ~ 52576154 (+)
LOC110498094 LOC106569575 coding upstream 532129 52118468 ~ 52150151 (+)
tfb2m tfb2m coding upstream 564109 52107642 ~ 52118171 (+)
LOC110498105 LOC106567684 coding downstream 109594 52795320 ~ 52835776 (+)
LOC110498109 1433b coding downstream 360519 53046245 ~ 53061764 (+)
LOC110498110 LOC106566892 coding downstream 381091 53066817 ~ 53097965 (+)
LOC110498111 NA coding downstream 420955 53106681 ~ 53113452 (+)
LOC110498114 LOC106566507 coding downstream 574004 53259730 ~ 53342222 (+)
G1636620 NA non-coding upstream 7285 52674601 ~ 52674995 (+)
G1636601 NA non-coding upstream 18496 52661714 ~ 52663784 (+)
G1636602 NA non-coding upstream 20884 52659308 ~ 52661396 (+)
G1636483 NA non-coding upstream 292186 52388786 ~ 52390094 (+)
G1636468 NA non-coding upstream 327037 52349604 ~ 52355243 (+)
G1636658 NA non-coding downstream 35854 52721580 ~ 52722677 (+)
G1637054 LOC105030512 non-coding downstream 50716 52736442 ~ 52736745 (+)
G1637059 NA non-coding downstream 55813 52741539 ~ 52744742 (+)
G1637060 NA non-coding downstream 60770 52746496 ~ 52746770 (+)
G1637061 NA non-coding downstream 61613 52747339 ~ 52747595 (+)
G1634948 NA other upstream 2071801 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 2427028 50243497 ~ 50265945 (+)
LOC110498072 NA other upstream 2514894 50163645 ~ 50168749 (+)
zgc:193593 NA other upstream 3503878 49160705 ~ 49178402 (+)
G1637065 NA other downstream 64874 52750600 ~ 52755474 (+)
G1637178 NA other downstream 231611 52917337 ~ 52918478 (+)
G1637730 NA other downstream 744278 53430004 ~ 53430560 (+)
G1638710 NA other downstream 1489070 54174796 ~ 54175130 (+)
G1638780 NA other downstream 1554530 54240256 ~ 54240751 (+)

Expression


Co-expression Network