XLOC_003554


Basic Information

Item Value
gene id XLOC_003554
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 31204986 ~ 31212769 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00008634
ATTCTTTGTTACAAATCTTTTTATTAAGATGTATTTTCTTCTCTCcacgtttatttattcatttacttttttacagtagttaatgtGCAATTTTCTTTCTCATTGGGTCACAGTAAAGGAATTCACAAAGTTATTGGCACTTGGAACACAGAGGAAAACACTGGCATTGGGTGAAGGATAACGGGAGTTTTGACATCAGTAGACGCTACTGCATTTGCTTCCAAAAAGAGCGGATTTCTGGGGAATTACATCTCATGCTGTGAGTGCACAACTAACAATCAAACTTCATTAGTGTTTCTATGTATAATGTACAGTGTATATATAGatctgtatttatatatgtatattcataTATCAGGAAAAGAAAATCTGCATGATCCCTGTAGCCACACACACACCAGAGACACTGCTCCGAGCCATGTTGACGGATCTTCTCGAGACCTCTCCCAAGGGAGGAGCTACACAATGTCCC

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00008634 True 472 lncRNA 0.38 2 31204986 31212769

Neighbor

gene id symbol gene type direction distance location
XLOC_003553 stx10 coding upstream 2135 31190155 ~ 31202851 (+)
XLOC_003552 stx10 coding upstream 71413 31121340 ~ 31133573 (+)
XLOC_003551 CR855274.2 coding upstream 149698 31047854 ~ 31055288 (+)
XLOC_003549 cacna1ab coding upstream 178651 30817943 ~ 31026335 (+)
XLOC_003550 CR855274.1 coding upstream 230094 30974771 ~ 30974892 (+)
XLOC_003556 trmt1 coding downstream 23232 31236001 ~ 31258356 (+)
XLOC_003557 NA coding downstream 72215 31284984 ~ 31320539 (+)
XLOC_003558 sipa1l2 coding downstream 110977 31323746 ~ 31473982 (+)
XLOC_003559 egln1b coding downstream 345237 31558006 ~ 31603692 (+)
XLOC_003560 zgc:162816 coding downstream 396712 31609481 ~ 31621674 (+)
XLOC_003369 CR854846.2 misc upstream 15081904 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 18492990 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 18510723 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 18519387 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 18524958 12679732 ~ 12680028 (+)
XLOC_003541 NA non-coding upstream 904932 30298703 ~ 30300054 (+)
XLOC_003537 NA non-coding upstream 951429 30252940 ~ 30253557 (+)
XLOC_003534 NA non-coding upstream 1101026 30091155 ~ 30103960 (+)
XLOC_003561 NA non-coding downstream 412402 31625171 ~ 31671413 (+)
XLOC_003563 AL844172.1 non-coding downstream 627299 31840068 ~ 31840189 (+)
XLOC_003564 CR556714.1 non-coding downstream 710342 31923111 ~ 31923225 (+)
XLOC_003565 CR556714.2 non-coding downstream 773159 31985928 ~ 31986044 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1425419 NA unknown NC_048581.1 CM023235.2 18319931 ~ 18326899 (-)