G1637293


Basic Information

Item Value
gene id G1637293
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53116727 ~ 53119961 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1873149
TCCAGTTTGTTTTCCATTTATTTTGCAGAATAGGTTAGAGTCAATGTACTGATCCACAGTCAATGAGCGTGAATGGAATAGATTCTCTGCTAGTCTACATACACACTGAACACCAGCTAGAACACAATATGGCAACCGCACTTTACCACAATGCATTAAGAGCAGGGCTGAGGTAAATTTGAATTGGAGTTAACTTAAATAACTAAAAAGTttagaaaaaaacagcttctattgtCAATGACTTCTCAATAAAATGAGGAATAAAAGCTATTTCAAACATTTTATATTTTCTTattttaaattaaaatcacttcctgaattgactgccttcaattgaaattgaccccagccctgatTGAGACAGTTACTGCCAAGGTTATTAACTCTTCTTTTATATTTAAATATCAACAAGCAAAATATATGTACATTAACAGATTAACCATTCTATTTCCAGTGAGTTAATATGGGGAGGCTTGTCATGGACATTTTCACATGCGACACCTCTTGTTGTCGCCTATCGAAGTTTATTCACAATCGAGGGAACTGTATGTCCCCATTTAAGATTAAATGTCAAAACATGTACAGAGAGTTGCTCTGCAACCAAAACCAAACAACATAAAATGTAGGAATATTAAATTAAACATGTCTGTTCAGTACAGGAACTAGTATGTATGTAAAACATGGGTAGTCTGCAACTACTGTGGTCCCAGCTAGTAATCAAGTTGTGTAATATGGTACAATCTAGTCCTGAGCACTATGAATCAGATTTAATACTATAATaggaatgtgtgtgagagagagagagagtgtaaaaaGTAGCTGCATTGTCCTTAACTGTAATCCAGCAGTGCCATCCCCCTTACAATGGCACCTCATCACAGGACAAGTTGTGTTTAGTACAATGACGACTGTGTGTGTCGACCACATCTACCTCTGTGTGAGAGCCATTTGGTAGCCTGCTGTCCATGACAGATAAAAGACACAGGACATCAGGAGCCATCACCCCATGAGCTTCATAAACCCCTCTGCTGTCTGTCAGAGATCAAACAGAAACCGGACCACTGGCTTTCACACACACTTCTGTCCCCCTTACCTCACCTCTCCTGCTGCCTGTCCTGCTGAGAGGACAGACACATTTCCTGCTCTACTGCAGCAAACAACAAAAAGTTGAGTGTGAAGGCCTGAGGGCTCAACCCAAAGATTAGCCACAGAGCGATGGAGGTTCACATCTTAAGTGTGATCTGTGGAGCTAAGATAGTTATCCATTTTATaactaagcaataaggcccgagggggtgtggtatatggccgatataacatggctaagggctgttcttaagcatgacgcaacactggagtgcctggatacagccctcaGCTGtattatattggccatataccacaaacccagtggtaccttattgctattataaactgattaccaatgtaattagagcagtaaaaatacatgttttgtcataccgtggtatacagtctgatataccacggccgtcagccaatcagcattccggGCCTCGAACCATCCTGTTTATAATGGCATCACACTGTAGACCATCGACATGAAGACAATGTGCTGTAAGTAACTGATATGGTTtcaagctgacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacatacacacacacacacacacacacacacacacacacacacatatactcccAGAAACCATCATTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCGTTGTTGCCACGTTACCGGCTGTCCCACGTCAACCCCCCGTTGTTACCACGTTACAGGTTGTcccacatcaccccccccccattGTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCATGTTATAGGCTGTCCCACATCACCCCCCCCCGTTGTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGAGGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTACCACGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTAACGCGTTACAGGCTGTCCCACGTCAAGCCCCTGTTCTTACCATGTTACAGGCTGTCCCACATCAACCCCCCGTTGTTAACGCGTTACAGGCTGTCTTGAGATGGGGACAGTGGATCATCCCTACGTGAGGGCTCTTAGCATATTCCTGGGTTAGCACCATTTTGAATTAAGTTTTTCCTCCCACATTGGAAGTCCTAAAAAGTTTACATGTCTTTGACTAATAAGCAATTATGCGTTTAAGAAATTGTTCACCCTTTAACCATGCAAGGAGATGGAATGTAAGCATAACAACTATATTCACATTAACGATAAGTGAAAGAAATCCTAAAGATCCACATTACTGTGTGTAGTCCCCTCTCTCAGTTGTTTTTAAATAACTTTCTGTACAATTCACACAGAGGAAAACCAAGTGAAACTTATGAACAGAACCTTCATTTTGTCAATAATCCTCTTAATGTTGTGAACACTCATTACAatcattgttttttaaaatgtcagATGGTGTCAGAAGTCTAAACACAGTTTCCTCATGAGCATTTGCGGGCTTGGTCTAAAGAGCAGTGATATGACGTCATGTAACATTCCCGGAGTGAAGGGTGTGCATGTTGTCATGGCAACCCCCAGACTGTCCAGCCAAAGCATTGGGCAGCGACACTTGATTCTTCTGTAGCGCAGGCACAAGCTTGATGATGAACATGATGATTTCGTCCCACAAACCAGCAGACGTGGGGAGGTGGAGGTTTCCATCCCAGATCAGTGCCTGTGTTGACCTTTGACCTTCAGTCCATGATGAAGTGT

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1873149 True 3118 lncRNA 0.44 2 53116727 53119961

Neighbor

gene id symbol gene type direction distance location
LOC110498111 NA coding upstream 3275 53106681 ~ 53113452 (+)
LOC110498110 LOC106566892 coding upstream 18762 53066817 ~ 53097965 (+)
LOC110498109 1433b coding upstream 54963 53046245 ~ 53061764 (+)
LOC110498105 LOC106567684 coding upstream 280951 52795320 ~ 52835776 (+)
LOC110498100 LOC106568224 coding upstream 469835 52612596 ~ 52646892 (+)
LOC110498114 LOC106566507 coding downstream 139769 53259730 ~ 53342222 (+)
LOC110498117 LOC106566340 coding downstream 222512 53342473 ~ 53444115 (+)
LOC118941378 NA coding downstream 487372 53606967 ~ 53609550 (+)
LOC110498124 LOC106565365 coding downstream 1597812 54717773 ~ 54815955 (+)
LOC110498125 LOC106565054 coding downstream 1792499 54912460 ~ 54923456 (+)
G1637184 NA non-coding upstream 188995 52927353 ~ 52927732 (+)
G1637109 LOC106567335 non-coding upstream 274240 52840946 ~ 52842487 (+)
G1637105 NA non-coding upstream 327205 52789317 ~ 52789522 (+)
G1637098 NA non-coding upstream 337955 52778542 ~ 52778772 (+)
G1637627 NA non-coding downstream 132818 53252779 ~ 53253015 (+)
G1637631 NA non-coding downstream 135042 53255003 ~ 53255733 (+)
G1637710 NA non-coding downstream 281449 53401410 ~ 53401684 (+)
G1637724 NA non-coding downstream 302041 53422002 ~ 53446973 (+)
G1637178 NA other upstream 198249 52917337 ~ 52918478 (+)
G1637065 NA other upstream 361253 52750600 ~ 52755474 (+)
hnrnpua hnrnpu other upstream 540573 52561723 ~ 52576154 (+)
G1634948 NA other upstream 2506248 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 2861475 50243497 ~ 50265945 (+)
G1637730 NA other downstream 310043 53430004 ~ 53430560 (+)
G1638710 NA other downstream 1054835 54174796 ~ 54175130 (+)
G1638780 NA other downstream 1120295 54240256 ~ 54240751 (+)
LOC110498128 LOC106610688 other downstream 1848396 54968308 ~ 54969856 (+)
LOC110498153 LOC106561476 other downstream 2807687 55927603 ~ 55932079 (+)

Expression


Co-expression Network