G1637724


Basic Information

Item Value
gene id G1637724
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53422002 ~ 53446973 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1873631
TATACTAGAATAgtcacacagtcagataggatggagataattttgatggataacacaagagggcaactgtaggtgtgcaaagtttcagactgataacttcaggaatgagtgagctacatgacatttagcatgaagtcacccaggtgtcccacacaagttgcccaaatgtacccaagtggccgaattggtgaaatgacctataactatatacaacagtgcaaataactatatacaacatataaaaaagcaattctaacacacacacacaaaaaaaatgtttttaacaaatattagaaaatacatatttaaaaaaaaaaaaaaaaacaacttcaAGGGGGATAAAGTGAAATCCTTGTGACAATCTCATttgtttttctcccagtttcgGGAATATAGCGCACCTTCCATTTCAAGAAAGcacaaaaaaaagtattaaatTAAATATGAGTGTCCGAACTGAAAACACATCACATAGATTGTCCTTTAAGCAAAGTCTTTTGATTCAATTAAAGAAATTCCAGAACCTGAGGACAAAAATAGAGGGGGAAAAAGCCCGGTTCCGAggtcctgtgtgtgttgtgtcttaACCAAACGCCTGCAAAAGATTGAGAAAGAAAGGCATGTTTAGAAAATGCAAACAGGGCAGAGATCCGGACAGACTGGCGCCAGGGAGGAAGCCGTAGTATTAAGATTTAACCAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1873631 True 701 lncRNA 0.37 2 53422002 53446973

Neighbor

gene id symbol gene type direction distance location
LOC110498114 LOC106566507 coding upstream 79780 53259730 ~ 53342222 (+)
LOC110498111 NA coding upstream 308550 53106681 ~ 53113452 (+)
LOC110498110 LOC106566892 coding upstream 324037 53066817 ~ 53097965 (+)
LOC110498109 1433b coding upstream 360238 53046245 ~ 53061764 (+)
LOC110498105 LOC106567684 coding upstream 586226 52795320 ~ 52835776 (+)
LOC118941378 NA coding downstream 160360 53606967 ~ 53609550 (+)
LOC110498124 LOC106565365 coding downstream 1270800 54717773 ~ 54815955 (+)
LOC110498125 LOC106565054 coding downstream 1465487 54912460 ~ 54923456 (+)
LOC110498386 htr1e coding downstream 1517862 54964835 ~ 54968539 (+)
LOC110498128 LOC106610688 coding downstream 1521335 54968308 ~ 54969856 (+)
G1637710 NA non-coding upstream 20318 53401410 ~ 53401684 (+)
G1637631 NA non-coding upstream 166269 53255003 ~ 53255733 (+)
G1637627 NA non-coding upstream 168987 53252779 ~ 53253015 (+)
G1637290 NA non-coding upstream 246742 53114380 ~ 53175260 (+)
G1637732 NA non-coding downstream 1579 53448552 ~ 53448992 (+)
G1637733 NA non-coding downstream 2856 53449829 ~ 53450127 (+)
G1637872 NA non-coding downstream 22642 53469615 ~ 53469820 (+)
G1637901 NA non-coding downstream 81561 53528534 ~ 53528860 (+)
G1637178 NA other upstream 503524 52917337 ~ 52918478 (+)
G1637065 NA other upstream 666528 52750600 ~ 52755474 (+)
hnrnpua hnrnpu other upstream 845848 52561723 ~ 52576154 (+)
G1634948 NA other upstream 2811523 50607386 ~ 50610479 (+)
LOC110498078 LOC106572417 other upstream 3166750 50243497 ~ 50265945 (+)
G1638710 NA other downstream 727823 54174796 ~ 54175130 (+)
G1638780 NA other downstream 793283 54240256 ~ 54240751 (+)
LOC110498153 LOC106561476 other downstream 2480675 55927603 ~ 55932079 (+)
G1641405 NA other downstream 3053184 56500157 ~ 56505897 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000062_02724898_02725662 ID2A, ID2 coding CI01000062 null 2723979 ~ 2726153 (-)