G1637975


Basic Information

Item Value
gene id G1637975
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 53609711 ~ 53611728 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1873900
agaggagaggagaggagaggagaggagaggagaggaggaaaacacTGTTCCGGGACCACTGTTTAGGTTTATTTTGATTTTTCTTAACCTGGAATGTTGAGCCACATTTGTCCGCTTTGTCGACGGCGATAGGAAGGAGGAGATAGATGTAGCTCACTGTAAACATCAGAAACCTTATGTTTGCACTGCAGTTGTGGAGCTGTAGTTTTTGAGGGGCTTTGTACAAAGGTTGCCCTTGGTACGCCTGTACTGTCCAGTGTATAGTGGTGTTTCATTGCCATTGTTTATAACCACATTACTGTGTTATTATTATGATATAAGTGTTTCTGCATTCGTATAATGGACCCCTGAAGCTATGACAACTCATCTGACCTCAATCTTTAGGTTGACATGACCTGACATACTGCAGTACGCATAACTGTTACTCTGTCCCAATATGCCTCCCTAATAATGGAGGGATCTTTTCCAAGGCGGTACGGTACTGCACCAAATAATCACATTCACCCTCCTCGCCAGAAAATACATTCCTACCTAATCACACCAACGTTTCCCTGGAATTGGTGGTTCAACTTGATGTGTTTTTAGTGCACATCTCAAGGTAGTTCGGCTCATTAAATTAGTCCCTAGACCTCTAGTACTGTCCATCAACTTAAACTGTTTCCATTTAAGGACCTCCTTTTTAAGATTTATTGTCCTCCTTTCAAACATGTTGATCATTTCCTGTTATGTTTGACTGTTTTACGAGGATGTACCTGCAACCTGACAGAATTGAACCCTCCTTTTATTAGAATCTCATAAAATGGCAGTAAATATTTTTCTTTGGTCTGCACACCAAAGAGATTTCTGTAAACCACTCTGTACCATGCTGGGGAAAGATTGACATTAATTTGAAGGACTCCCACATTCGCATAGCTCAAATAGCCAAACCCATATGCAATGCTGTCTTGCCAAGGTGTGTACCATTTGATCAAATCTGAATCTGAAACCATGAGGTAAACACATATTTAATGACTTGATTCCGACGAATAGTTAATTAATACCATCTGAATGCATTATATGCCTGAGCAGTTGGGGGTTTGAAAAACTCACAGAGCAAGCGTAGCCTAGGGCAACAACAGAGCCAATTAACCTAGGGCAACCGAACTGTAGAGAGAGTCCACCGGTCTCCACAGCCTCCTAATGTGAACCATACCTTCCACCACGGTCTTACTCACACTCTCATGCTCTTACCTCACACGGAGGAATTAGGGCAGGAAGTCAACGCATGCGTCAGGGTGTAGTTTTCAACATGGAGGTCAGGTCGCCAACATGCTAGGATAGACCCCCTGTAGGAGCGATACAGAGGGCAATGCTAATAGGAGCCAAGCATTAGCCTGCTAGCCTTAGTATATTTTTGTCTGAGGGTAGTTTAACAGGCTCTCGGAAACGTATGTTCTGGACGGGAGACTGAGGTAAAAATGATTGTGATGTAGTTTAGAACATAATTATGACATGGAGCACTAGTCACTGTGAACCTGCATAAGTCAACGTTATGTTGTCAACGTACTATTCATTTATTTTGAATGACATCACTAGTTTGTCATCTAGACTCGAATCCACCAATCATGGACCTTGAATGGTGGTCTCCTAGGGAGGAGGGTCATGTTCTTCTGGATCAGATTGGGTCACCTCCATGGCATTTTTGTGGCTGACTGACCATAATTGTGTTAGGTTAATGATGGCTGAGGCCTCCAAGCTAAAAGTCAGGGTGAAAGACTGTTAGGTCAAATGTAACACCAGATATCAGGCCAGACAAGGTCATCCTTTTCGAACAGGGCCTTTCAAAACGTTTGATTTATTGCTAACTGCTATGACTTGACATCTGAATCTTGTAACAAAGGAGACATACTTTACCCTTCGTTATGGACTGTCATTAGATATGTGTACGTTCTAATTCTGCCAATAGATATGTGTATGTTCTAATTCTGTCAATAGATATGTGTATGTTCTAATTATGCCATTAGATATGTGTATGTTCT

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1873900 True 2018 lncRNA 0.42 1 53609711 53611728

Neighbor

gene id symbol gene type direction distance location
LOC118941378 NA coding upstream 161 53606967 ~ 53609550 (+)
LOC110498117 LOC106566340 coding upstream 165596 53342473 ~ 53444115 (+)
LOC110498114 LOC106566507 coding upstream 267489 53259730 ~ 53342222 (+)
LOC110498111 NA coding upstream 496259 53106681 ~ 53113452 (+)
LOC110498110 LOC106566892 coding upstream 511746 53066817 ~ 53097965 (+)
LOC110498124 LOC106565365 coding downstream 1106045 54717773 ~ 54815955 (+)
LOC110498125 LOC106565054 coding downstream 1300732 54912460 ~ 54923456 (+)
LOC110498386 htr1e coding downstream 1353107 54964835 ~ 54968539 (+)
LOC110498128 LOC106610688 coding downstream 1356580 54968308 ~ 54969856 (+)
LOC110498129 LOC106564756 coding downstream 1362964 54974692 ~ 54987042 (+)
G1637901 NA non-coding upstream 80851 53528534 ~ 53528860 (+)
G1637872 NA non-coding upstream 139891 53469615 ~ 53469820 (+)
G1637733 NA non-coding upstream 159584 53449829 ~ 53450127 (+)
G1637732 NA non-coding upstream 160719 53448552 ~ 53448992 (+)
G1638018 NA non-coding downstream 36558 53648286 ~ 53648603 (+)
G1638043 NA non-coding downstream 49187 53660915 ~ 53661135 (+)
G1638075 NA non-coding downstream 66764 53678492 ~ 53678695 (+)
G1638086 NA non-coding downstream 75601 53687329 ~ 53687688 (+)
G1638087 NA non-coding downstream 77567 53689295 ~ 53689532 (+)
G1637730 NA other upstream 179151 53430004 ~ 53430560 (+)
G1637178 NA other upstream 691233 52917337 ~ 52918478 (+)
G1637065 NA other upstream 854237 52750600 ~ 52755474 (+)
hnrnpua hnrnpu other upstream 1033557 52561723 ~ 52576154 (+)
G1634948 NA other upstream 2999232 50607386 ~ 50610479 (+)
G1638710 NA other downstream 563068 54174796 ~ 54175130 (+)
G1638780 NA other downstream 628528 54240256 ~ 54240751 (+)
LOC110498153 LOC106561476 other downstream 2315920 55927603 ~ 55932079 (+)
G1641405 NA other downstream 2888429 56500157 ~ 56505897 (+)

Expression


Co-expression Network