G1639424


Basic Information

Item Value
gene id G1639424
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54833105 ~ 54834219 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1875407
caccaactcattcaagggtttttctttatttttactattttctacattgtagaataatagtgaagacatgtgtactgggtcattgtcctgttgaaaaacaaatgatagtcccagaaagcgcaaaccagatgggatggcgtatcgctgcagaatgctgtggtagccatgctggttcagtgtgccttgaattctttatagattacagacagtgtcactagcaaatcaccatcatacctcctcctccatgctttatggtgggaaccgcacatgcggagatcatccgttcacctactctgcgtctcacaaagacacggcggttgtaaccaaaaatctcaaatttggatttccacaggtctaatgtccattgcttgggtTTCTTGGCTatagcaagtctcttcttattattggtgtccttgagtagtggtttctttgcagcaactcgaccataaagccctgattcacgcattcctctgaacagttgctgttttgatgtgtctgttacttgaactctgtgaagcatttatttggtctgcaatatgaggtgcagttaactctaatgtaattctgggtcttctattcctgtggctgtcctcatgatagctagtttcatcatagctgatagctagtttcatcatagcgcttttttcaactgcacttcaagaaactttcaaagttcttgacattttccacattgactgaccttcatgtcgttatgatggtctgtcgtttctcttaacttatttgagctgttcttgccgtaatatggacttggtcttttaccaactaaggctatcttctgtataccacccctaccttgtcacaacacaactgattgtctcaaacgcattaagaaggaaagacattccacaaattaatatTTAACAAGACCCACCTGTttactgaaatgcattccaggtgactacctcatgaagctggttgagaaaatgccaagactTTGCatagttgtcatcaaggcaaagggtcgcTATATATAGATTTGTTTAAcgcttgtttggttactacatgattccatatgtgttattttatag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1875407 True 1049 lncRNA 0.40 2 54833105 54834219

Neighbor

gene id symbol gene type direction distance location
LOC110498124 LOC106565365 coding upstream 17150 54717773 ~ 54815955 (+)
LOC118941378 NA coding upstream 1223555 53606967 ~ 53609550 (+)
LOC110498117 LOC106566340 coding upstream 1388990 53342473 ~ 53444115 (+)
LOC110498114 LOC106566507 coding upstream 1490883 53259730 ~ 53342222 (+)
LOC110498111 NA coding upstream 1719653 53106681 ~ 53113452 (+)
LOC110498125 LOC106565054 coding downstream 78241 54912460 ~ 54923456 (+)
LOC110498386 htr1e coding downstream 130616 54964835 ~ 54968539 (+)
LOC110498128 LOC106610688 coding downstream 134089 54968308 ~ 54969856 (+)
LOC110498129 LOC106564756 coding downstream 140473 54974692 ~ 54987042 (+)
orc3 orc3 coding downstream 153519 54987738 ~ 54996574 (+)
G1639266 NA non-coding upstream 251522 54581373 ~ 54581583 (+)
G1639252 NA non-coding upstream 263951 54568873 ~ 54569154 (+)
G1639233 NA non-coding upstream 283065 54549818 ~ 54550040 (+)
G1639212 NA non-coding upstream 299567 54533323 ~ 54533538 (+)
G1639193 NA non-coding upstream 313852 54518900 ~ 54519253 (+)
G1639435 NA non-coding downstream 9283 54843502 ~ 54851610 (+)
G1639448 NA non-coding downstream 24896 54859115 ~ 54859553 (+)
G1639458 NA non-coding downstream 43030 54877249 ~ 54877781 (+)
G1639459 NA non-coding downstream 43848 54878067 ~ 54878455 (+)
G1639490 NA non-coding downstream 94338 54928557 ~ 54928792 (+)
G1638780 NA other upstream 592354 54240256 ~ 54240751 (+)
G1638710 NA other upstream 657975 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1402545 53430004 ~ 53430560 (+)
G1637178 NA other upstream 1914627 52917337 ~ 52918478 (+)
G1637065 NA other upstream 2077631 52750600 ~ 52755474 (+)
LOC110498153 LOC106561476 other downstream 1093429 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1665938 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1675710 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1991733 56825952 ~ 56830309 (+)

Expression


Co-expression Network