G1639475



Basic Information


Item Value
gene id G1639475
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54941208 ~ 54942492 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>TU1875459
TCACCTCCATTTTACAGTATAAAACAATTTATTTGCAGGAATGCAAAAAACGTTGTTGGCCACCAACAATGGTTTAAAACTGCTAACATCTTTTCAAAAGGTGGTTGTAATGATTTTATTGAGGGAGTTAACTGTGTACAAAACCGGATGAATAGTTCGGTATCCTTTTTCGCTATACATGGAATACAAATCATAGCTGCAGTATCCCTTTGACCACAATGACAACGATCCCCCACCCCCCTGAAACAGCTACAGGCACACAGGCAATTCATTTCAATCAAGTGGCTTAACTAAATAGTAGCTGGCTTAGAGTTAGAGGGGGACTGTTCaagatttcacatgattgggacaTTTCTTTTAAactaaatggggggggggggggtaggggGGTGATTGTTTAGGTGGCAGTTTGGGGGAGATGCTTCTGTAAGGCTGGAATATTGGACCATTTCGCTGACTTATCCATCCGTATCCGTTGCCGCTTTTGGTGTAACCCAACACAGTAGGTCAGTCTTCATAGTGACAGGTCAGGATCGGCCTCGAGC

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU1875459 True 545 lncRNA 0.44 3 54941208 54942492

Neighbor


gene id symbol gene type direction distance location
LOC110498125 LOC106565054 coding upstream 17752 54912460 ~ 54923456 (+)
LOC110498124 LOC106565365 coding upstream 125253 54717773 ~ 54815955 (+)
LOC118941378 NA coding upstream 1331658 53606967 ~ 53609550 (+)
LOC110498117 LOC106566340 coding upstream 1497093 53342473 ~ 53444115 (+)
LOC110498114 LOC106566507 coding upstream 1598986 53259730 ~ 53342222 (+)
LOC110498386 htr1e coding downstream 22343 54964835 ~ 54968539 (+)
LOC110498128 LOC106610688 coding downstream 25816 54968308 ~ 54969856 (+)
LOC110498129 LOC106564756 coding downstream 32200 54974692 ~ 54987042 (+)
orc3 orc3 coding downstream 45246 54987738 ~ 54996574 (+)
LOC110498133 LOC106563926 coding downstream 194923 55137415 ~ 55176085 (+)
G1639490 NA non-coding upstream 12416 54928557 ~ 54928792 (+)
G1639459 NA non-coding upstream 62753 54878067 ~ 54878455 (+)
G1639458 NA non-coding upstream 63427 54877249 ~ 54877781 (+)
G1639448 NA non-coding upstream 81655 54859115 ~ 54859553 (+)
G1639435 NA non-coding upstream 89598 54843502 ~ 54851610 (+)
G1639477 LOC106564860 non-coding downstream 2830 54945322 ~ 54945724 (+)
G1639522 NA non-coding downstream 61429 55003921 ~ 55004629 (+)
G1639549 NA non-coding downstream 102327 55044819 ~ 55045070 (+)
G1639550 NA non-coding downstream 102672 55045164 ~ 55045469 (+)
G1639551 NA non-coding downstream 103357 55045849 ~ 55046055 (+)
G1638780 NA other upstream 700457 54240256 ~ 54240751 (+)
G1638710 NA other upstream 766078 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1510648 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2022730 52917337 ~ 52918478 (+)
G1637065 NA other upstream 2185734 52750600 ~ 52755474 (+)
LOC110498153 LOC106561476 other downstream 985156 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1557665 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1567437 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1883460 56825952 ~ 56830309 (+)

Expression



Co-expression Network