G1639477 (LOC106564860)


Basic Information

Item Value
gene id G1639477
gene name LOC106564860
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 54945322 ~ 54945724 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1875461
CTTTAGCAAACTCTTCCACAATCTGATCTTTTGTTTTACTCTTGGGGATGGAACCAACGAACAGTCTATTATTGGCCACAGAGATGCACACGCCAATATGTTTGCCGGGTCGAATTTCATTGTTGTTACACAGCTTGACAGCCTCCTGTGCCGCCTCTTTAGTGCAGAAAGTGACAAAGGCGTAACCTCTGTTGAGGCCACTGAGTGGATCCATCATCAGACGCAGGTCCCAAATGGGCCCAGCTTTCTCAAACAGAGGTACCAGCTCATCCTCAAATAGATCTCTGGGGATCTTGCCAA

Function

NR:

description
PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1875461 True 300 lncRNA 0.48 2 54945322 54945724

Neighbor

gene id symbol gene type direction distance location
LOC110498125 LOC106565054 coding upstream 21866 54912460 ~ 54923456 (+)
LOC110498124 LOC106565365 coding upstream 129367 54717773 ~ 54815955 (+)
LOC118941378 NA coding upstream 1335772 53606967 ~ 53609550 (+)
LOC110498117 LOC106566340 coding upstream 1501207 53342473 ~ 53444115 (+)
LOC110498114 LOC106566507 coding upstream 1603100 53259730 ~ 53342222 (+)
LOC110498386 htr1e coding downstream 19111 54964835 ~ 54968539 (+)
LOC110498128 LOC106610688 coding downstream 22584 54968308 ~ 54969856 (+)
LOC110498129 LOC106564756 coding downstream 28968 54974692 ~ 54987042 (+)
orc3 orc3 coding downstream 42014 54987738 ~ 54996574 (+)
LOC110498133 LOC106563926 coding downstream 191691 55137415 ~ 55176085 (+)
G1639475 NA non-coding upstream 2830 54941208 ~ 54942492 (+)
G1639490 NA non-coding upstream 16530 54928557 ~ 54928792 (+)
G1639459 NA non-coding upstream 66867 54878067 ~ 54878455 (+)
G1639458 NA non-coding upstream 67541 54877249 ~ 54877781 (+)
G1639448 NA non-coding upstream 85769 54859115 ~ 54859553 (+)
G1639522 NA non-coding downstream 58197 55003921 ~ 55004629 (+)
G1639549 NA non-coding downstream 99095 55044819 ~ 55045070 (+)
G1639550 NA non-coding downstream 99440 55045164 ~ 55045469 (+)
G1639551 NA non-coding downstream 100125 55045849 ~ 55046055 (+)
G1639554 NA non-coding downstream 103185 55048909 ~ 55049135 (+)
G1638780 NA other upstream 704571 54240256 ~ 54240751 (+)
G1638710 NA other upstream 770192 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1514762 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2026844 52917337 ~ 52918478 (+)
G1637065 NA other upstream 2189848 52750600 ~ 52755474 (+)
LOC110498153 LOC106561476 other downstream 981924 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1554433 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1564205 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1880228 56825952 ~ 56830309 (+)

Expression


Co-expression Network