G1640210


Basic Information

Item Value
gene id G1640210
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55354567 ~ 55354904 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876280
TACATATTTGACACTTctgttctcaatgacattcaaatcagcattgaaaaaaggagcaagtttaagtttgttccatttgagcaagtctgaccacaagtcagagaccactatgatgacacaccaaatgtgtttgaaggattacgggaaaagagcaggaataggcttttataggctacagtccaagctatgtcttccaatggtgcgactgctgtcggcatccaaagtttatccaacttgaataaacgcttggaggtaaggatgacagcagagGATATCAcgtattattgatatctacatagcgcattgatgtgaatcacactgctgctatcatttagcta

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876280 True 338 lncRNA 0.40 1 55354567 55354904

Neighbor

gene id symbol gene type direction distance location
LOC118941490 NA coding upstream 125691 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 215539 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 357993 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 367525 54974692 ~ 54987042 (+)
LOC110498128 LOC106610688 coding upstream 384711 54968308 ~ 54969856 (+)
si:ch211-15d5.11 LOC106563256 coding downstream 20631 55375535 ~ 55403366 (+)
rlf LOC106563209 coding downstream 73542 55428446 ~ 55444908 (+)
zmpste24 LOC106563167 coding downstream 99850 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 111004 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 114003 55468907 ~ 55472622 (+)
G1640199 NA non-coding upstream 12418 55341860 ~ 55342149 (+)
G1640198 NA non-coding upstream 12909 55341398 ~ 55341658 (+)
G1640188 NA non-coding upstream 26771 55327496 ~ 55327796 (+)
G1640143 NA non-coding upstream 86776 55265819 ~ 55267791 (+)
G1640141 NA non-coding upstream 92503 55261792 ~ 55262064 (+)
G1640241 NA non-coding downstream 58876 55413780 ~ 55414008 (+)
G1640242 NA non-coding downstream 59572 55414476 ~ 55415744 (+)
G1640247 NA non-coding downstream 67489 55422393 ~ 55422719 (+)
G1640218 NA non-coding downstream 105534 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 113027 55467931 ~ 55468192 (+)
G1638780 NA other upstream 1113816 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1179437 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1924007 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2436089 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 572744 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1145253 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1155025 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1471048 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1780922 57135826 ~ 57143925 (+)

Expression


Co-expression Network