G1640241


Basic Information

Item Value
gene id G1640241
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55413780 ~ 55414008 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876316
CCTttaaatcaactaaatgtatatAAAACAGAATTCATATTTTATATCAACAATTGTATGAATTTATGTTAAAACAGCTTTCCATATTGGATGTGCTTGTCCCAAAACATCTGTGGCTTCTTGCTGCTACAAATATAGATTTCTGACATTGGTGCCAATAATAAACAGAACACAACTGCTCAATAAATTGAAAGTTGCATGACAACACATTGTAAAAAATCAAtgaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876316 True 229 lncRNA 0.30 1 55413780 55414008

Neighbor

gene id symbol gene type direction distance location
si:ch211-15d5.11 LOC106563256 coding upstream 10414 55375535 ~ 55403366 (+)
LOC118941490 NA coding upstream 184904 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 274752 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 417206 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 426738 54974692 ~ 54987042 (+)
rlf LOC106563209 coding downstream 14438 55428446 ~ 55444908 (+)
zmpste24 LOC106563167 coding downstream 40746 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 51900 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 54899 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 56880 55470888 ~ 55470969 (+)
G1640210 NA non-coding upstream 58876 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 71631 55341860 ~ 55342149 (+)
G1640198 NA non-coding upstream 72122 55341398 ~ 55341658 (+)
G1640188 NA non-coding upstream 85984 55327496 ~ 55327796 (+)
G1640143 NA non-coding upstream 145989 55265819 ~ 55267791 (+)
G1640242 NA non-coding downstream 468 55414476 ~ 55415744 (+)
G1640247 NA non-coding downstream 8385 55422393 ~ 55422719 (+)
G1640218 NA non-coding downstream 46430 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 53923 55467931 ~ 55468192 (+)
G1640255 NA non-coding downstream 82148 55496156 ~ 55498648 (+)
LOC110498128 LOC106610688 other upstream 444170 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1173029 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1238650 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1983220 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2495302 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 513640 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1086149 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1095921 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1411944 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1721818 57135826 ~ 57143925 (+)

Expression


Co-expression Network