G1640247


Basic Information

Item Value
gene id G1640247
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55422393 ~ 55422719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876326
CCCAGGAGCTtctcaaagggtggctactttgaagaatctgaaatataaaatacattttgatatgtttaacactttttttggttactacatgattccatatgtgttatgtcagttttgatgtcgtcactattattctacaatgtagaaagtagtaaaaagaaaggaaaaacccttgaatgagtaggtgtgtccaaacttttgactagtactgtatattctGCAGGATTCCTGCATGATTTTTAGTGCATTACTCATGTAGGACTTTGTAAGGGATGTATCTTCTACAACGTTATAATAAAAGTTTATCTTCAAGGTTTTATGACAGAC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876326 True 327 lncRNA 0.33 1 55422393 55422719

Neighbor

gene id symbol gene type direction distance location
si:ch211-15d5.11 LOC106563256 coding upstream 19027 55375535 ~ 55403366 (+)
LOC118941490 NA coding upstream 193517 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 283365 55137415 ~ 55176085 (+)
orc3 orc3 coding upstream 425819 54987738 ~ 54996574 (+)
LOC110498129 LOC106564756 coding upstream 435351 54974692 ~ 54987042 (+)
rlf LOC106563209 coding downstream 5727 55428446 ~ 55444908 (+)
zmpste24 LOC106563167 coding downstream 32035 55454754 ~ 55459560 (+)
atp5if1b LOC106563115 coding downstream 43189 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 46188 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 48169 55470888 ~ 55470969 (+)
G1640242 NA non-coding upstream 6649 55414476 ~ 55415744 (+)
G1640241 NA non-coding upstream 8385 55413780 ~ 55414008 (+)
G1640210 NA non-coding upstream 67489 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 80244 55341860 ~ 55342149 (+)
G1640198 NA non-coding upstream 80735 55341398 ~ 55341658 (+)
G1640218 NA non-coding downstream 37719 55460438 ~ 55464025 (+)
G1640257 NA non-coding downstream 45212 55467931 ~ 55468192 (+)
G1640255 NA non-coding downstream 73437 55496156 ~ 55498648 (+)
G1640411 NA non-coding downstream 94927 55517646 ~ 55518062 (+)
G1640691 NA non-coding downstream 298117 55720836 ~ 55721162 (+)
LOC110498128 LOC106610688 other upstream 452783 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1181642 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1247263 54174796 ~ 54175130 (+)
G1637730 NA other upstream 1991833 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2503915 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 504929 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1077438 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1087210 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1403233 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1713107 57135826 ~ 57143925 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
mexican tetra (Astyanax mexicanus) G162178 NA non-coding NC_035914.1 CM008317.1 32564980 ~ 32568473 (-)