G1640218


Basic Information

Item Value
gene id G1640218
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55460438 ~ 55464025 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876289
GGTGGAACTATCCCTGGCCAGTAGGAGTGGAACTATCCCTGGCCAGTAGGGGTGGAACTATCCCTATCCAATCCATTTTAGGGGGGGGGCTGAGAAAAAAATATCAAGAGTGTCAATAGGATGTACAGCGAATGGGCCGTCAATTTATTATTAGTAGTATATCCTGCTGGTCGATTGGCTCCATCTACAACTGTTTAttatgagaggtgtgtgtgaacaCTAGAACTTTAAAAGATACACACCATTTCAGATTTAGTCAAGACTATGCTTAAGATGGATCGTTGTTGAAgttatacaggtaactgccaaagtaATGAAACACTTGAGGAAATTAGgcatacaaagtatattgaaagcacgTGCTTCCACACTGGTGTGGTTTctaagttaattaagcaattaacatcccatcgtgcttagggtcatgtataaaaatacaggccattattttggctaatGGATGACAATGCCCCTATCCACAGAGtggtcaaataaaattgtatttgacacATGCGCcgttaccatgaaatgcttatttacaagcccctaaccaacaatgcagattaagagggggggacaatgcaagtagtctgggtagccatttgattagatgtccaggagtcttatggcttgggggtagaagctgtttaaaagcctcttggacttagacttggcgctccggtaccgcttgccgtactgtaacagagagaacagtctgtgactagggtggctagagtctttgacaatttttagggccttcctctgacaccgtctggtatagaggtcctggatggcaggaagcttggccaatcgcacaaccctctgtagtgccttgcggtcggaagccGAGCGGTtaccataccagacagtgatgcaaacagtcaggatgctctcgatggggcagctgtagaaccttttgaggatattaggaccccatgccaaatcttctcggtctcctgaggggggaataggtttcgccgtgccctcttcacaactgtcttggtgtgcttggaccgtgTTTGATGtaatatgtaaactcagcaaaaaaaagaaacgtcctctcactgtcaactgtgtttattttcagcaaacttaacgtgtaaatatttgtatgaacaagattcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaatggaataatgtgttcctgaacaaagggaaggggtcaaaatcaaaagtaacagttagTAGCTGGTgtagccaccagctgcattaagtactgcagtgcatctcctcctcatggactgcaccagatttgtcagttctcgctgtgagatgttaccccacttccaccaaggcacctgcaagttcccggacatttctggggggaatggccctagcccttgccctccgatccaacaggtcccagacatgctaaatgggattgagatccggggatttgtcagtgaagagcactttttgccattcctgtctggtccagcgacgttgggtttgtgcccataggcgacgttgttgccggtgatgtctggtgaggatctgtCTGACAACAGGCAaacaaaccctcagtccagcctctctcagcctattgcagaccgtctgagcactgatggagggattgtgcgttcctggtgtaactcgggaagATGGTGTTGCCAttttgtacctgtcccgcaggtgtgatgttcgtatgtactgatcctgtgcagttgttacacgtggtctgtcactgcgaggacgatcagctgtccgtcatgTTTCCCTGtggcactgtcttaggcgtctcacagtacgtacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgccaaaggcacgtttacgcagatgagcagggaccctgggcgtctttcttttggtgtttttcagagtcagtagaaaggcctttttagtagcctacgttttcataactgtgaccttaattgcctaccgtctgtaagctgttactctcttaacgaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctggatttttacgaattacctttgaaagacagggtcctgaaaaagggacttgtttttttgctgagtttacgtaagggtaaagtgactgcatagataataaacagcgagtagcagtagcgtaaaaaagGGGCTCAATTACAAATGTCCAGGTAGCcttttgattaactgttcagtagTTTTATGGCTTaggtgtagaagctgttaaggagccttttggacctagacttggcttgATGAGCATGAactatgtaaaccatatgccacggccgtctgtcaccagatctcaacccaattgaacacttgtgGCAGATTCTGGATcaggcgcctgagacagcgttttccaccaccattgaAACacccaaattatggaatttcttgtggaataATGGTATTgcgtccctccaatagagttccacatACTTGTAGAAGCTATGCCAAAGTGAATttaagctgttctggcagctcattgtagcccaacaccctattaaccTATCAAGACActttgttggtgtttcctttattttggcagttatctgTATTAAGGTTTGAGTGCATGTGACTTCCCAGGGATCTGTCACTTGTGGTGATAGTTTTTAAGTAATACTTGGGCCAATGATGGACCAAAGGAATTTTCAATTTAGGTTAAATTTCCTAATTTCTTTTTACAacacattttctattttttaatGCACTTTTAATGGTCTGAGCATACTATACTTGTAAATCATTGAATAGCTTAATGGCAAAGGGAGAAAAAGTGAATAGATTTGTAATATATGAATGTGGTTTGGATTCCTgttattgtgttttttttctcttctggtgcctgtgtgtgtgatagtgaaCCCAGTTTTGACTGAAGAGGGTGGGGGGGCTACATCAGATTAATCAAGTGTTTGGTTTGTTATAGAAGGACATACTTTTCTTGCAGCATTGTGAATAAAGTCCCTCA
>TU1876290
GGTGGAACTATCCCTGGCCAGTAGGAGTGGAACTATCCCTGGCCAGTAGGGGTGGAACTATCCCTATCCAATCCATTTTAGGGGGGGGGCTGAGAAAAAAATATCAAGAGTGTCAATAGGATGTACAGCGAATGGGCCGTCAATTTATTATTAGTAGTATATCCTGCTGGTCGATTGGCTCCATCTACAACTGTTTAttatgagaggtgtgtgtgaacaCTAGAACTTTAAAAGATACACACCATTTCAGATTTAGTCAAGACTATGCTTAAGATGGATCGTTGTTGAAgttatacaggtaactgccaaagtaATGAAACACTTGAGGAAATTAGgcatacaaagtatattgaaagcacgTGCTTCCACACTGGTGTGGTTTctaagttaattaagcaattaacatcccatcgtgcttagggtcatgtataaaaatacaggccattattttggctaatGGATGACAATGCCCCTATCCACAGAGtggtcaaataaaattgtatttgacacATGCGCcgttaccatgaaatgcttatttacaagcccctaaccaacaatgcagattaagagggggggacaatgcaagtagtctgggtagccatttgattagatgtccaggagtcttatggcttgggggtagaagctgtttaaaagcctcttggacttagacttggcgctccggtaccgcttgccgtactgtaacagagagaacagtctgtgactagggtggctagagtctttgacaatttttagggccttcctctgacaccgtctggtatagaggtcctggatggcaggaagcttggccaatcgcacaaccctctgtagtgccttgcggtcggaagccGAGCGGTtaccataccagacagtgatgcaaacagtcaggatgctctcgatggggcagctgtagaaccttttgaggatattaggaccccatgccaaatcttctcggtctcctgaggggggaataggtttcgccgtgccctcttcacaactgtcttggtgtgcttggaccgtgTTTGATGtaatatgtaaactcagcaaaaaaaagaaacgtcctctcactgtcaactgtgtttattttcagcaaacttaacgtgtaaatatttgtatgaacaagattcaacaactgagacataaactgaacaagttccacagacatgtgactaacagaaatggaataatgtgttcctgaacaaagggaaggggtcaaaatcaaaagtaacagttagTAGCTGGTgtagccaccagctgcattaagtactgcagtgcatctcctcctcatggactgcaccagatttgtcagttctcgctgtgagatgttaccccacttccaccaaggcacctgcaagttcccggacatttctggggggaatggccctagcccttgccctccgatccaacaggtcccagacatgctaaatgggattgagatcccacgatttgtcagtgaagagcactttttgccattcctgtctggtccagcgacgttgggtttgtgcccataggcgacgttgttgccggtgatgtctggtgaggatctgtCTGACAACAGGCAaacaaaccctcagtccagcctctctcagcctattgcagaccgtctgagcactgatggagggattgtgcgttcctggtgtaactcgggaagATGGTGTTGCCAttttgtacctgtcccgcaggtgtgatgttcgtatgtactgatcctgtgcagttgttacacgtggtctgtcactgcgaggacgatcagctgtccgtcatgTTTCCCTGtggcactgtcttaggcgtctcacagtacgtacattgcaatttattgccctggccacatctgcagtcctcatgcctccttgcagcatgccaaaggcacgtttacgcagatgagcagggaccctgggcgtctttcttttggtgtttttcagagtcagtagaaaggcctttttagtagcctacgttttcataactgtgaccttaattgcctaccgtctgtaagctgttactctcttaacgaccgttccacaggtgcatgttcattaattgtttatggttcattgaacaagcatgggaaacagtgtttaaaccctttacaatgaagatctggatttttacgaattacctttgaaagacagggtcctgaaaaagggacttgtttttttgctgagtttacgtaagggtaaagtgactgcatagataataaacagcgagtagcagtagcgtaaaaaagGGGCTCAATTACAAATGTCCAGGTAGCcttttgattaactgttcagtagTTTTATGGCTTaggtgtagaagctgttaaggagccttttggacctagacttggcttgATGAGCATGAactatgtaaaccatatgccacggccgtctgtcaccagatctcaacccaattgaacacttgtgGCAGATTCTGGATcaggcgcctgagacagcgttttccaccaccattgaAACacccaaattatggaatttcttgtggaataATGGTATTgcgtccctccaatagagttccacatACTTGTAGAAGCTATGCCAAAGTGAATttaagctgttctggcagctcattgtagcccaacaccctattaaccTATCAAGACActttgttggtgtttcctttattttggcagttatctgTATTAAGGTTTGAGTGCATGTGACTTCCCAGGGATCTGTCACTTGTGGTGATAGTTTTTAAGTAATACTTGGGCCAATGATGGACCAAAGGAATTTTCAATTTAGGTTAAATTTCCTAATTTCTTTTTACAacacattttctattttttaatGCACTTTTAATGGTCTGAGCATACTATACTTGTAAATCATTGAATAGCTTAATGGCAAAGGGAGAAAAAGTGAATAGATTTGTAATATATGAATGTGGTTTGGATTCCTgttattgtgttttttttctcttctggtgcctgtgtgtgtgatagtgaaCCCAGTTTTGACTGAAGAGGGTGGGGGGGCTACATCAGATTAATCAAGTGTTTGGTTTGTTATAGAAGGACATACTTTTCTTGCAGCATTGTGAATAAAGTCCCTCA

Function

NR:

description
PREDICTED: uncharacterized protein LOC105030512

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876289 False 3043 lncRNA 0.44 2 55460438 55464025
TU1876290 True 3043 lncRNA 0.44 2 55460438 55464025

Neighbor

gene id symbol gene type direction distance location
zmpste24 LOC106563167 coding upstream 878 55454754 ~ 55459560 (+)
rlf LOC106563209 coding upstream 15530 55428446 ~ 55444908 (+)
si:ch211-15d5.11 LOC106563256 coding upstream 57072 55375535 ~ 55403366 (+)
LOC118941490 NA coding upstream 231562 55226853 ~ 55228876 (+)
LOC110498133 LOC106563926 coding upstream 321410 55137415 ~ 55176085 (+)
atp5if1b LOC106563115 coding downstream 1883 55465908 ~ 55467811 (+)
rpl13a rpl13a coding downstream 4882 55468907 ~ 55472622 (+)
LOC118941555 NA coding downstream 6863 55470888 ~ 55470969 (+)
LOC118941561 NA coding downstream 7326 55471351 ~ 55471422 (+)
LOC118941554 NA coding downstream 8136 55472161 ~ 55472242 (+)
G1640247 NA non-coding upstream 37719 55422393 ~ 55422719 (+)
G1640242 NA non-coding upstream 44694 55414476 ~ 55415744 (+)
G1640241 NA non-coding upstream 46430 55413780 ~ 55414008 (+)
G1640210 NA non-coding upstream 105534 55354567 ~ 55354904 (+)
G1640199 NA non-coding upstream 118289 55341860 ~ 55342149 (+)
G1640257 NA non-coding downstream 3906 55467931 ~ 55468192 (+)
G1640255 NA non-coding downstream 32131 55496156 ~ 55498648 (+)
G1640411 NA non-coding downstream 53621 55517646 ~ 55518062 (+)
G1640691 NA non-coding downstream 256811 55720836 ~ 55721162 (+)
G1640697 NA non-coding downstream 264500 55728525 ~ 55728767 (+)
LOC110498128 LOC106610688 other upstream 490828 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1219687 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1285308 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2029878 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2541960 52917337 ~ 52918478 (+)
LOC110498153 LOC106561476 other downstream 463623 55927603 ~ 55932079 (+)
G1641405 NA other downstream 1036132 56500157 ~ 56505897 (+)
G1641407 NA other downstream 1045904 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 1361927 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1671801 57135826 ~ 57143925 (+)

Expression


Co-expression Network