G1640755


Basic Information

Item Value
gene id G1640755
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55826007 ~ 55826803 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876882
AACATGCCAAGCTCCAAGCTACAGCATGCACTGAAACTCATCCATACCATTAGTATCTAGTCTGATTCTATGAGACCTAACTCACAGCTCCATACCATTAGGTCTCATAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCATAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCATAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCGTAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCGTAGAATCAGACTAGATACTAACTCACAGCTCCATACCATTAGGTCTCGTAGAATCAGACTAGATACTAACTCACAGCTCCAAAATTACACGTCTCTTACAAGATGAAGCATAAATCCACTATAATGAAATACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876882 True 479 lncRNA 0.40 3 55826007 55826803

Neighbor

gene id symbol gene type direction distance location
kdm1a LOC106562352 coding upstream 40286 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 119279 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 343439 55473083 ~ 55482568 (+)
LOC118941554 NA coding upstream 353765 55472161 ~ 55472242 (+)
LOC118941561 NA coding upstream 354585 55471351 ~ 55471422 (+)
LOC110498388 LOC106561476 coding downstream 25313 55852116 ~ 55882702 (+)
LOC110498153 LOC106561476 coding downstream 100800 55927603 ~ 55932079 (+)
LOC118941493 LOC106561950 coding downstream 287366 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding downstream 423810 56250613 ~ 56254784 (+)
LOC110498155 LOC106561796 coding downstream 617720 56444523 ~ 56584678 (+)
G1640730 NA non-coding upstream 31621 55788921 ~ 55794386 (+)
G1640697 NA non-coding upstream 97240 55728525 ~ 55728767 (+)
G1640691 NA non-coding upstream 104845 55720836 ~ 55721162 (+)
G1640411 NA non-coding upstream 307945 55517646 ~ 55518062 (+)
G1640255 NA non-coding upstream 327359 55496156 ~ 55498648 (+)
G1640789 LOC106562077 non-coding downstream 56077 55882880 ~ 55885747 (+)
G1640786 NA non-coding downstream 105932 55932735 ~ 55934404 (+)
G1640832 NA non-coding downstream 141027 55967830 ~ 55968118 (+)
G1640841 NA non-coding downstream 163867 55990670 ~ 55992248 (+)
G1640835 NA non-coding downstream 179735 56006538 ~ 56006852 (+)
LOC110498128 LOC106610688 other upstream 856397 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1585256 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1650877 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2395447 53430004 ~ 53430560 (+)
G1637178 NA other upstream 2907529 52917337 ~ 52918478 (+)
G1641405 NA other downstream 673354 56500157 ~ 56505897 (+)
G1641407 NA other downstream 683126 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 999149 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1309023 57135826 ~ 57143925 (+)

Expression


Co-expression Network