G1640786


Basic Information

Item Value
gene id G1640786
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 55932735 ~ 55934404 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1876915
agaaacaaagaactttcttctgaaacttgtcagtttattcttgttctgagaaatgaacgctattccatgcgagaaattgccaagaaactgaatatctcgtaCAACACTATGTACTACtttcttcacagaacagcgcaaaatgTCTCTAACCAgattagaaagaggagtgggaggccccggtgcacaactgagaaagaggacaagtacattagtgtctagtttgagaaacagacactttacaagcccagcttcaataaatagtacccgcaaaacaccagtctcaacgtcaacagtgaagaggcgactccaggatgttggccttctaggcagagttcctctgtccagtctcaacgtcaacattgaagaggcgactccaggatgctggtcttctaggcagagttcctctgtccagtctcaacgtcaacagtgaagaggcgactccaggatgttggccttctaggcagagttcctctgtccagtctcaacgtcaacattgaagaggcgactccaggatgctggtcttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggtcttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctatgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggccttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgctggtcttctaggcagagttcctctgtccagtctcaacatcaacagtgaagaggcgactccgggatgttggccttctaggcagagttcctctatccagtgtctgtgttcttttgcccatcttttatttgtattggccagtctgagatatgtctttttctttgcaactctgcctacaaggccagcatcccggagtcacctcttcattgttgacgttgagactggggttttacgggtactatttaatgaagctgtcagttgaggacttgtgaggcatgtCCAACTAGTCcaaaaaaggccagttttattgcttctttaatcaggacaacagttttcagcattgctaacataat

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1876915 True 1402 lncRNA 0.49 2 55932735 55934404

Neighbor

gene id symbol gene type direction distance location
LOC110498153 LOC106561476 coding upstream 656 55927603 ~ 55932079 (+)
LOC110498388 LOC106561476 coding upstream 50033 55852116 ~ 55882702 (+)
kdm1a LOC106562352 coding upstream 147014 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 226007 55679068 ~ 55706728 (+)
LOC110498147 LOC106562977 coding upstream 450167 55473083 ~ 55482568 (+)
LOC118941493 LOC106561950 coding downstream 179765 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding downstream 316209 56250613 ~ 56254784 (+)
LOC110498155 LOC106561796 coding downstream 510119 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 599666 56534070 ~ 56538629 (+)
LOC110498162 LOC106560907 coding downstream 916501 56850905 ~ 56862683 (+)
G1640789 LOC106562077 non-coding upstream 46988 55882880 ~ 55885747 (+)
G1640755 NA non-coding upstream 105932 55826007 ~ 55826803 (+)
G1640730 NA non-coding upstream 138349 55788921 ~ 55794386 (+)
G1640697 NA non-coding upstream 203968 55728525 ~ 55728767 (+)
G1640691 NA non-coding upstream 211573 55720836 ~ 55721162 (+)
G1640832 NA non-coding downstream 33426 55967830 ~ 55968118 (+)
G1640841 NA non-coding downstream 56266 55990670 ~ 55992248 (+)
G1640835 NA non-coding downstream 72134 56006538 ~ 56006852 (+)
G1640860 NA non-coding downstream 93698 56028102 ~ 56028323 (+)
G1640864 NA non-coding downstream 107483 56041887 ~ 56042241 (+)
LOC110498128 LOC106610688 other upstream 963125 54968308 ~ 54969856 (+)
G1638780 NA other upstream 1691984 54240256 ~ 54240751 (+)
G1638710 NA other upstream 1757605 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2502175 53430004 ~ 53430560 (+)
G1641405 NA other downstream 565753 56500157 ~ 56505897 (+)
G1641407 NA other downstream 575525 56509929 ~ 56511097 (+)
G1641713 LOC106560842 other downstream 891548 56825952 ~ 56830309 (+)
G1641935 NA other downstream 1201422 57135826 ~ 57143925 (+)
G1642062 NA other downstream 1340649 57275053 ~ 57276777 (+)

Expression


Co-expression Network