Gene
RNA
| Item | Value |
|---|---|
| gene id | G1640841 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048583.1 |
| NCBI id | CM023237.2 |
| chromosome length | 67237266 |
| location | 55990670 ~ 55992248 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU1876974 | False | 240 | lncRNA | 0.50 | 2 | 55990670 | 55991039 |
| TU1876975 | True | 249 | lncRNA | 0.50 | 3 | 55990670 | 55992248 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110498153 | LOC106561476 | coding | upstream | 58591 | 55927603 ~ 55932079 (+) |
| LOC110498388 | LOC106561476 | coding | upstream | 107968 | 55852116 ~ 55882702 (+) |
| kdm1a | LOC106562352 | coding | upstream | 204949 | 55759827 ~ 55785721 (+) |
| htr1d | LOC106562880 | coding | upstream | 283942 | 55679068 ~ 55706728 (+) |
| LOC110498147 | LOC106562977 | coding | upstream | 508102 | 55473083 ~ 55482568 (+) |
| LOC118941493 | LOC106561950 | coding | downstream | 121921 | 56114169 ~ 56432709 (+) |
| LOC118941492 | LOC106612417 | coding | downstream | 258365 | 56250613 ~ 56254784 (+) |
| LOC110498155 | LOC106561796 | coding | downstream | 452275 | 56444523 ~ 56584678 (+) |
| LOC118941494 | NA | coding | downstream | 541822 | 56534070 ~ 56538629 (+) |
| LOC110498162 | LOC106560907 | coding | downstream | 858657 | 56850905 ~ 56862683 (+) |
| G1640832 | NA | non-coding | upstream | 22552 | 55967830 ~ 55968118 (+) |
| G1640786 | NA | non-coding | upstream | 56266 | 55932735 ~ 55934404 (+) |
| G1640789 | LOC106562077 | non-coding | upstream | 104923 | 55882880 ~ 55885747 (+) |
| G1640755 | NA | non-coding | upstream | 163867 | 55826007 ~ 55826803 (+) |
| G1640730 | NA | non-coding | upstream | 196284 | 55788921 ~ 55794386 (+) |
| G1640835 | NA | non-coding | downstream | 14290 | 56006538 ~ 56006852 (+) |
| G1640860 | NA | non-coding | downstream | 35854 | 56028102 ~ 56028323 (+) |
| G1640864 | NA | non-coding | downstream | 49639 | 56041887 ~ 56042241 (+) |
| G1640923 | NA | non-coding | downstream | 153028 | 56145276 ~ 56145498 (+) |
| G1640929 | NA | non-coding | downstream | 181245 | 56173493 ~ 56189363 (+) |
| LOC110498128 | LOC106610688 | other | upstream | 1021060 | 54968308 ~ 54969856 (+) |
| G1638780 | NA | other | upstream | 1749919 | 54240256 ~ 54240751 (+) |
| G1638710 | NA | other | upstream | 1815540 | 54174796 ~ 54175130 (+) |
| G1637730 | NA | other | upstream | 2560110 | 53430004 ~ 53430560 (+) |
| G1641405 | NA | other | downstream | 507909 | 56500157 ~ 56505897 (+) |
| G1641407 | NA | other | downstream | 517681 | 56509929 ~ 56511097 (+) |
| G1641713 | LOC106560842 | other | downstream | 833704 | 56825952 ~ 56830309 (+) |
| G1641935 | NA | other | downstream | 1143578 | 57135826 ~ 57143925 (+) |
| G1642062 | NA | other | downstream | 1282805 | 57275053 ~ 57276777 (+) |
