G1640968


Basic Information

Item Value
gene id G1640968
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56264759 ~ 56264960 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1877105
TCACGTGATCGTGCCCTTTTCACAGGAATCGCAACTTCGAAGTAGGCAACTAGTGAAGACAGACATCGGGGATGCAACAGCGCACGTTGAATTCCAAGGTGCATATTGGAGATGTTAGAAGAACTGCCCACATTTACTTTGTCAGAcaacaagatgagtaacgaacagcaaaagcactagcctatgtcactCTACTATCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1877105 True 202 lncRNA 0.46 1 56264759 56264960

Neighbor

gene id symbol gene type direction distance location
LOC118941492 LOC106612417 coding upstream 9975 56250613 ~ 56254784 (+)
LOC110498153 LOC106561476 coding upstream 332680 55927603 ~ 55932079 (+)
LOC110498388 LOC106561476 coding upstream 382057 55852116 ~ 55882702 (+)
kdm1a LOC106562352 coding upstream 479038 55759827 ~ 55785721 (+)
htr1d LOC106562880 coding upstream 558031 55679068 ~ 55706728 (+)
LOC110498155 LOC106561796 coding downstream 179563 56444523 ~ 56584678 (+)
LOC118941494 NA coding downstream 269110 56534070 ~ 56538629 (+)
LOC110498162 LOC106560907 coding downstream 585945 56850905 ~ 56862683 (+)
LOC110498163 LOC106610662 coding downstream 793574 57058534 ~ 57062178 (+)
LOC110498164 LOC106609486 coding downstream 810567 57075527 ~ 57080042 (+)
G1640952 NA non-coding upstream 37353 56227153 ~ 56227406 (+)
G1640942 NA non-coding upstream 50073 56214210 ~ 56214686 (+)
G1640940 NA non-coding upstream 53145 56208706 ~ 56211614 (+)
G1640929 NA non-coding upstream 75396 56173493 ~ 56189363 (+)
G1640923 NA non-coding upstream 119261 56145276 ~ 56145498 (+)
G1641221 NA non-coding downstream 5085 56270045 ~ 56270297 (+)
G1641228 NA non-coding downstream 11181 56276141 ~ 56276502 (+)
LOC118941493 LOC106561950 non-coding downstream 16121 56114169 ~ 56432709 (+)
G1641407 NA non-coding downstream 244969 56509929 ~ 56511097 (+)
G1641412 NA non-coding downstream 259259 56524219 ~ 56526253 (+)
LOC110498128 LOC106610688 other upstream 1295149 54968308 ~ 54969856 (+)
G1638780 NA other upstream 2024008 54240256 ~ 54240751 (+)
G1638710 NA other upstream 2089629 54174796 ~ 54175130 (+)
G1637730 NA other upstream 2834199 53430004 ~ 53430560 (+)
G1641405 NA other downstream 235197 56500157 ~ 56505897 (+)
G1641713 LOC106560842 other downstream 560992 56825952 ~ 56830309 (+)
G1641935 NA other downstream 870866 57135826 ~ 57143925 (+)
G1642062 NA other downstream 1010093 57275053 ~ 57276777 (+)

Expression


Co-expression Network