G1641713 (LOC106560842)


Basic Information

Item Value
gene id G1641713
gene name LOC106560842
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 56825952 ~ 56830309 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1877964
TGGCCATCTCACCTGGGGGCAGCAGGCCCGGCCAGGGGGCGGTGGGGTCCAGCTTGCTGATATCGTAGGGGTGTTGTCCGGGGAGGGTGCCCAGGTGGGAGGGTCGCACAGTGGGCATGAGAAGCGGGCCATATGGGTGGTGGGGCTCTAGGCCGCTGGGGGAGTAGAGTTCATGGAGGGGCCTGGGGGCCCCGTAGGCTTGGCATTGTGCGTAGCCCCACTCCTCTGCTGGGTGCAGGTGTGAGTGGGGGTGAGGAAGGCCTGGGTGGAGTCCAGAAGCGTAGGGGTCCATGGAATAGGTGGGTGCTCTGGGCTCGCAGCGGGAGCGACACTGGGGGGAGGGGTAGTTGCTATCCCAGAAGGATGGGGGGAAGCTGTGGCGACTGCTGGGTGAAGGGGTGtCTGTGCCCAGGTCCAACGCCCTCCTCTTGCCCTCTCCTTCCATGTAGGAGCTGAGTGCCCTGGAGAAGTGTTCGTCCACCACACTGCTGATGTCCCCCTGGTAGTACGTGAAGAGGATGCAACGTGACGTCAGGTACTCAGCCTCGGGGACTTCCTGTTTCTCCTTAGGGCCTTCCACCGGTCGCTTGGCGGAGGGatatgaggaagaggaagagccgGGGCCCACGCTGGTGCCTGACGACACCCCCCCGGGACCCCTTTGCATCCCCCTGCTTTCCATCATGAAGTCTCTGTGGCGAGGAGAGGTGCTCCTCAGACCGACTGGTG

Function

NR:

description
PREDICTED: transcription cofactor vestigial-like protein 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1877964 True 729 TUCP 0.64 2 56825952 56830309

Neighbor

gene id symbol gene type direction distance location
LOC110498155 LOC106561796 coding upstream 241274 56444523 ~ 56584678 (+)
LOC118941494 NA coding upstream 287323 56534070 ~ 56538629 (+)
LOC118941493 LOC106561950 coding upstream 393243 56114169 ~ 56432709 (+)
LOC118941492 LOC106612417 coding upstream 571168 56250613 ~ 56254784 (+)
LOC110498153 LOC106561476 coding upstream 893873 55927603 ~ 55932079 (+)
LOC110498162 LOC106560907 coding downstream 20596 56850905 ~ 56862683 (+)
LOC110498163 LOC106610662 coding downstream 228225 57058534 ~ 57062178 (+)
LOC110498164 LOC106609486 coding downstream 245218 57075527 ~ 57080042 (+)
LOC110511273 LOC106609620 coding downstream 255984 57086293 ~ 57088604 (+)
LOC110517953 LOC106609620 coding downstream 258760 57089069 ~ 57096631 (+)
G1641712 NA non-coding upstream 1010 56824111 ~ 56824942 (+)
G1641701 NA non-coding upstream 21543 56804066 ~ 56804409 (+)
G1641697 NA non-coding upstream 24811 56800834 ~ 56801141 (+)
G1641694 NA non-coding upstream 28632 56797054 ~ 56797320 (+)
G1641693 NA non-coding upstream 30146 56795557 ~ 56795806 (+)
G1641718 NA non-coding downstream 4680 56834989 ~ 56835618 (+)
G1641732 NA non-coding downstream 29896 56860205 ~ 56860646 (+)
G1641747 NA non-coding downstream 65589 56895898 ~ 56897188 (+)
G1641749 NA non-coding downstream 68568 56898877 ~ 56906795 (+)
G1641407 NA other upstream 314855 56509929 ~ 56511097 (+)
G1641405 NA other upstream 320055 56500157 ~ 56505897 (+)
LOC110498128 LOC106610688 other upstream 1856342 54968308 ~ 54969856 (+)
G1638780 NA other upstream 2585201 54240256 ~ 54240751 (+)
G1641935 NA other downstream 305517 57135826 ~ 57143925 (+)
G1642062 NA other downstream 444744 57275053 ~ 57276777 (+)
G1642565 NA other downstream 826040 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 1334168 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1463027 58293310 ~ 58298259 (+)

Expression


Co-expression Network