G1642062


Basic Information

Item Value
gene id G1642062
gene name NA
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57275053 ~ 57276777 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1878413
AGCTCCTATCCTTACTACGTCACTTACCTAGGACACAAAAAAGGCTGGAATGGACTCTCTTGAAAGCAACTCATTCAAAGACAACAAAGAAATGCTTGCTCTCTTTCCTGGTCATTTCTTATGAGAGAATATTCTGAACCACTTTGATGTGTTGTGATCTGATGACTAGAGACTCCCATAAACTGTAATTGTATAAACAGACAGTGCACTTAAGGAAGTCGCCATAAAGAAAGAAGGGATGAAAGAGATCATATTACAGGAAGGAATGCCACCCTCACAACCCGACAGAAGAGAGTGAAAACGCCTCCCTCTGCTTTTGACCTCTAATACCTGTATGCTTTACATCTGTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGGTATTAAAGGGATGTTTTTATCACACCTTACAGCACAGGATATTAAAGGGATGTTTTTACCACACCTTACCGCCCAGGGTATTAAAGGGATGTTTTTATCACACCTTACGGCCCAGGGTATTAAAGGGATGTTTTTACCACACCGTATCGCCCAGGGTATTAAAGGGATGTTTTTACCACACCTTACGGCCCAGGATATTAAAGGGATATTTTTACCACACGTTGCTTCCCAGGGGAAATTATAAGAGCAACAGCTGTAGCCACATAACTGCTGGAATACCTGTGATGCAGACTGCCTGCGCGTGTGTCTGAGATTATAACCATACCATTGGATTACCTGGCAATGACATACATACAAcactggtgtctggaggagtgaGATCGTGTGCTGTGGGAGCCCTAGAAAAGAGGATGAATAGTCGGCATTGTCCACTGCCTTCCTGGAAACTAAGGAGACTTAAGAGATTCATGCCATGTCAGTCACGGTACGTCGGGACTCTGAGCCAGATGCAATGAATACCTGCTCAGTGACCGGTGGCGATTATGTCTGGGGCTGGAACGACCTGGAACTGAAAGCGCATTTGTGGCTGCCAGCCTGTCTCCTGGGGCTCCAGGGTTCTCTGGCTGCCGAACTGAAATGGAACCCCAGTGTCTAAGGTGGTTTTGGGCCAGACTCCAGCTCCAGCCTGGCTGGAGCCTGGGTGGAGCCTGGGTGATTTGGTTTTCTCCGTCTCCAGAGGAGTCTGTCTTCCTACAGTCGACAGGGGAAAGGAAGAGACTGTCACCGCAGTGAAATACACAAAGCTGGGTTGTATTCAGTAGGCAccaaatggactgaaacaggaaaagactacctgaacttgtccaataagaaatgcaaaTTTTTCATTTTAgtttgccctaatgaacatgacccaattCTAGTGCCTTTTTCCATACAGTAGATCTCGGTTCTGGGTCTATACTAAAGGCATGGACAGTTGGACACTTCCATATTGTAAAGAAAAGAGAAGGTTGTAGAGAATTGTAAATAGATATTATTACACCCATGAATTGTGATGGAAGGATTCCATATCGCTAACCATAAGCTAGTATTGAGACATTAGTTGTTTTCCTAGTCTCTTGAGCACCATAACTCTACAGTGTAATTACATTTTACTAGTGCATACTCACATCTGACCACTCCCATTCATATCAATTCATATTTGTCATGTTCTGAATCTGCAGTAAAGGCATATTAATACATTGCATTGCGTGTTCCAGC

Function

NR:

description
uncharacterized protein LOC109904604

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1878413 True 1725 TUCP 0.44 1 57275053 57276777

Neighbor

gene id symbol gene type direction distance location
LOC110498167 LOC106612547 coding upstream 451 57215239 ~ 57274602 (+)
LOC110498389 LOC106612499 coding upstream 78098 57176839 ~ 57196955 (+)
LOC118941498 LOC106609620 coding upstream 107996 57069851 ~ 57167057 (+)
LOC118936466 LOC106609620 coding upstream 130935 57141510 ~ 57144118 (+)
LOC110498166 LOC106609620 coding upstream 138158 57113265 ~ 57136895 (+)
LOC110498392 LOC106612959 coding downstream 123980 57400757 ~ 57502753 (+)
nipal3 nipal3 coding downstream 278173 57554950 ~ 57563838 (+)
LOC110498171 rcan3 coding downstream 287500 57564277 ~ 57648271 (+)
slc25a47b LOC106560560 coding downstream 549899 57826676 ~ 57830485 (+)
LOC110498394 NA coding downstream 581093 57857870 ~ 57888014 (+)
G1642100 NA non-coding upstream 2306 57272452 ~ 57272747 (+)
G1641933 NA non-coding upstream 112794 57161279 ~ 57162259 (+)
G1642060 NA non-coding downstream 550 57277327 ~ 57278371 (+)
G1642101 NA non-coding downstream 2483 57279260 ~ 57279537 (+)
G1642080 NA non-coding downstream 6347 57283124 ~ 57315063 (+)
G1642195 NA non-coding downstream 160980 57437757 ~ 57440684 (+)
G1642237 NA non-coding downstream 252192 57528969 ~ 57529664 (+)
G1641935 NA other upstream 131128 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 444744 56825952 ~ 56830309 (+)
G1641407 NA other upstream 763956 56509929 ~ 56511097 (+)
G1641405 NA other upstream 769156 56500157 ~ 56505897 (+)
LOC110498153 LOC106561476 other upstream 1344758 55927603 ~ 55932079 (+)
G1642565 NA other downstream 379572 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 887700 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 1016559 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1777746 59054523 ~ 59057223 (+)
G1644280 NA other downstream 1919907 59196684 ~ 59197013 (+)

Expression


Co-expression Network