G1642080


Basic Information

Item Value
gene id G1642080
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 57283124 ~ 57315063 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1878434
tatttgaccaaggaggagagtgatggagtgctgcatcagatgacctggcctccacaatcacctgacctcaacccaaattagattatttgggatgagttggactgcagagtgaaggaaaagccgctcagcatatgtgggatctccttcaagcattccaggtgaaactggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagtgtggctactttgaagaatctcaaatatgaaatacttttttggttactaaaggattccataggtgttatttcatagttgtgatgtcttcactattattgtacaatgtagaaaatagtaaaaaataaattaaaacccttg
>TU1878433
caatatcaactgttcagaggagactgtgtgaatcaggacttcatgcTCGAATTACTgctaagaaaccactactaaaagacacctataagaagaagagacatgtttgggccaagaaacacaaacaatggacattagaccggtggaaatctgttctttggtctgatgagttcaaatttgagatttttggttaaaacctccgtgtctttgtgagacgcagagtaggtgaacggatgatctctgcatgtgtgattcccaccgtgaagcatggaggtggcgtGATGGCGCTTTGCTGTTGACACcgacaatgaccctacacACCTCCACgctttgtaagggctatttgaccaagaagaagagtgatgagtgctgcatcagatgacctggcctccacaatcacctgacctcaacccaaattagattatttgggatgagttggactgcagagtgaaggaaaagccgctcagcatatgtgggatctccttcaagcattccaggtgaaactggttgagagaatgccaagagtgtgcaaagctgtcatcaaggcaaagtgtggctactttgaagaatctcaaatatgaaatacttttttggttactaaaggattccataggtgttatttcatagttgtgatgtcttcactattattgtacaatgtagaaaatagtaaaaaataaattaaaacccttg

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU1878434 False 351 lncRNA 0.40 2 57283124 57315063
TU1878433 True 687 lncRNA 0.42 2 57314258 57315063

Neighbor

gene id symbol gene type direction distance location
LOC110498167 LOC106612547 coding upstream 8522 57215239 ~ 57274602 (+)
LOC110498389 LOC106612499 coding upstream 86169 57176839 ~ 57196955 (+)
LOC118941498 LOC106609620 coding upstream 116067 57069851 ~ 57167057 (+)
LOC118936466 LOC106609620 coding upstream 139006 57141510 ~ 57144118 (+)
LOC110498166 LOC106609620 coding upstream 146229 57113265 ~ 57136895 (+)
LOC110498392 LOC106612959 coding downstream 85694 57400757 ~ 57502753 (+)
nipal3 nipal3 coding downstream 239887 57554950 ~ 57563838 (+)
LOC110498171 rcan3 coding downstream 249214 57564277 ~ 57648271 (+)
slc25a47b LOC106560560 coding downstream 511613 57826676 ~ 57830485 (+)
LOC110498394 NA coding downstream 542807 57857870 ~ 57888014 (+)
G1642101 NA non-coding upstream 3587 57279260 ~ 57279537 (+)
G1642060 NA non-coding upstream 4753 57277327 ~ 57278371 (+)
G1642100 NA non-coding upstream 10377 57272452 ~ 57272747 (+)
G1641933 NA non-coding upstream 120865 57161279 ~ 57162259 (+)
G1642195 NA non-coding downstream 122694 57437757 ~ 57440684 (+)
G1642237 NA non-coding downstream 213906 57528969 ~ 57529664 (+)
G1642268 NA non-coding downstream 290506 57605569 ~ 57605914 (+)
G1642283 NA non-coding downstream 310438 57625501 ~ 57625762 (+)
G1642285 NA non-coding downstream 314097 57629160 ~ 57629514 (+)
G1642062 NA other upstream 6347 57275053 ~ 57276777 (+)
G1641935 NA other upstream 139199 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 452815 56825952 ~ 56830309 (+)
G1641407 NA other upstream 772027 56509929 ~ 56511097 (+)
G1641405 NA other upstream 777227 56500157 ~ 56505897 (+)
G1642565 NA other downstream 341286 57656349 ~ 57682553 (+)
G1642993 LOC106611338 other downstream 849414 58164477 ~ 58176485 (+)
LOC110498189 klhdc1 other downstream 978273 58293310 ~ 58298259 (+)
G1644123 NA other downstream 1739460 59054523 ~ 59057223 (+)
G1644280 NA other downstream 1881621 59196684 ~ 59197013 (+)

Expression


Co-expression Network