G1642993 (LOC106611338)


Basic Information

Item Value
gene id G1642993
gene name LOC106611338
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58164477 ~ 58176485 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1879513
gcTGACACTCACCACGTGCACCACCTCTGGGTAGATGGGCTCTGTGATGACATTCCGGTTGTGCGTGATGTACTCCACCATCTCGCTCAGCGCCGCCCGCTTCACCTCCTTCCATTTCAGGTCACTTAGTGGGTCTGACAGGAAGTCAAAGAGCACGCAGCACTGGCGCAGCTTCTGCACAAACAGCTTCTCCTGCTCTGCCGGAGCACagTCTGAAGTGCATAAGAGCCACCGGCTGGAAAGGCCCATTGGAATTAGGTGCATCCACAACCATCCTGATTCCAGCTTTATTGCATGTCAACATCTAAACTCGACCAGGAAGGCAATCCACTTAAGGTAAGGGGCCAGCCTCCATTTTAGCACAAAAGCAGATGAGAAAATGAAGCGTTCTGCTGCTGGAGGGAACTGTCTAGTTAGTGACGTCAGCGGTAAGGAGCAAGCCGGTTGGCTGAGCCCAG

Function

NR:

description
serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit gamma isoform isoform X3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1879513 True 458 TUCP 0.54 2 58164477 58176485

Neighbor

gene id symbol gene type direction distance location
dio3a dio3 coding upstream 52533 58110510 ~ 58111944 (+)
LOC110498180 dlk1 coding upstream 123855 58034131 ~ 58040622 (+)
LOC110498394 NA coding upstream 276463 57857870 ~ 57888014 (+)
slc25a47b LOC106560560 coding upstream 333992 57826676 ~ 57830485 (+)
LOC110498171 rcan3 coding upstream 516206 57564277 ~ 57648271 (+)
dync1h1 dync1h1 coding downstream 16494 58192979 ~ 58248705 (+)
LOC118941557 NA coding downstream 59310 58235795 ~ 58235866 (+)
LOC118941558 NA coding downstream 59764 58236249 ~ 58236320 (+)
LOC118941559 NA coding downstream 66841 58243326 ~ 58243397 (+)
LOC118941556 NA coding downstream 69981 58246466 ~ 58246535 (+)
G1642991 NA non-coding upstream 22441 58141805 ~ 58142036 (+)
G1642946 NA non-coding upstream 82361 58081726 ~ 58082116 (+)
G1642923 NA non-coding upstream 88146 58054904 ~ 58076331 (+)
G1642824 NA non-coding upstream 269199 57893885 ~ 57895278 (+)
G1642766 NA non-coding upstream 277139 57887124 ~ 57887338 (+)
G1642937 NA non-coding downstream 85887 58262372 ~ 58262955 (+)
G1643045 NA non-coding downstream 100092 58276577 ~ 58276929 (+)
G1643049 pole2 non-coding downstream 112262 58288747 ~ 58289560 (+)
LOC110498189 klhdc1 non-coding downstream 116851 58293310 ~ 58298259 (+)
G1643053 lrr1 non-coding downstream 132215 58308700 ~ 58310184 (+)
G1642565 NA other upstream 481924 57656349 ~ 57682553 (+)
G1642062 NA other upstream 887700 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1020552 57135826 ~ 57143925 (+)
G1641713 LOC106560842 other upstream 1334168 56825952 ~ 56830309 (+)
G1641407 NA other upstream 1653380 56509929 ~ 56511097 (+)
G1644123 NA other downstream 878038 59054523 ~ 59057223 (+)
G1644280 NA other downstream 1020199 59196684 ~ 59197013 (+)
G1644569 NA other downstream 1432115 59608600 ~ 59609394 (+)
G1644651 NA other downstream 1571499 59747984 ~ 59748345 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01088044_00001235_00001618 NA coding CI01088044 null 892 ~ 1786 (-)