G1643532


Basic Information

Item Value
gene id G1643532
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58617119 ~ 58617324 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1880130
gaacagcttctacccctaagccataagactgctgaacagttaatcaaatgaccacccagactatttacttCGACcccattattttattattttttgcacAGGCTCGATGTACACACTGGATTCTAACTACGCactcactgatactccaacacacacatggacacacacaaaacacacattcacattgcTTCACACTCTTCATACTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1880130 True 206 lncRNA 0.41 1 58617119 58617324

Neighbor

gene id symbol gene type direction distance location
LOC110498192 LOC106610665 coding upstream 50413 58382544 ~ 58566706 (+)
dnaaf2 klhdc1 coding upstream 308945 58300100 ~ 58308174 (+)
LOC110498189 klhdc1 coding upstream 318860 58293310 ~ 58298259 (+)
wdr20a LOC106611292 coding upstream 357727 58251569 ~ 58259392 (+)
LOC118941556 NA coding upstream 370584 58246466 ~ 58246535 (+)
degs2 degs2 coding downstream 21721 58639045 ~ 58648752 (+)
disp2 disp2 coding downstream 238407 58855731 ~ 58868973 (+)
LOC110498202 LOC106608562 coding downstream 266482 58883806 ~ 58892741 (+)
prlh2r LOC106608506 coding downstream 277928 58895252 ~ 58904165 (+)
LOC110498208 LOC106608166 coding downstream 398139 59015463 ~ 59022319 (+)
G1643530 NA non-coding upstream 4123 58612778 ~ 58612996 (+)
mis18bp1 mis18bp1 non-coding upstream 10490 58606103 ~ 58625926 (+)
G1643516 NA non-coding upstream 11596 58599582 ~ 58605523 (+)
G1643511 NA non-coding upstream 39305 58577568 ~ 58577814 (+)
G1643398 NA non-coding upstream 41811 58539078 ~ 58575308 (+)
G1643586 LOC106608927 non-coding downstream 101327 58718651 ~ 58722660 (+)
G1643591 NA non-coding downstream 119170 58736494 ~ 58739850 (+)
G1643594 NA non-coding downstream 124184 58741508 ~ 58741882 (+)
G1643645 NA non-coding downstream 216472 58833796 ~ 58834011 (+)
G1643658 NA non-coding downstream 258495 58875819 ~ 58876093 (+)
G1642993 LOC106611338 other upstream 440634 58164477 ~ 58176485 (+)
G1642565 NA other upstream 934566 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1340342 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1473194 57135826 ~ 57143925 (+)
G1644123 NA other downstream 437199 59054523 ~ 59057223 (+)
G1644280 NA other downstream 579360 59196684 ~ 59197013 (+)
G1644569 NA other downstream 991276 59608600 ~ 59609394 (+)
G1644651 NA other downstream 1130660 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1766197 60382983 ~ 60392450 (+)

Expression


Co-expression Network