G1644062


Basic Information

Item Value
gene id G1644062
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 58969093 ~ 58969919 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1880728
ctgcccctatcatcaccaagcttatctctgacctttttaacctgtctgtcatctctggggaggttcccattgcttggaaggcagtcacgatgcatcctttatttaaagggggagataaAGCTGATCCTAACGGTTCTAGGCCAATttctacataatgtttctgccaccgtgtcgTGTCCGAAAAGAGCTTCCTGATATCAGGAAAGAGATTACTCACCCCGTAGTGGAGGAATTCTAATTCTTCAACGAGTCGGACGggaaggatttactccagaccAAGCCCTCATCCCAGTCATTCGCAGGAGGAAAAGACAGAGATTTTATGGACGATGGTCCGGGTGTCTTGTAAGGATCCGTCGCCGagagggtaatctacctttaccatcagtcctattagccaacgtacgaTGGATTATTCGATCGATAATAAAAATAGAGGAACTacgagcacgtatatcctaccaacgggacattaaaaacggattgcgatttcttataagcttctgggttagagtcccgctccttgaaagtggcagctctaccctttagctcagtgcggatgttgcctgtaatccatggtttctggttggggtataaaAATACAACATCATCGAGGCActtaatgaagccagtgactgatgtagtgtactCAATGTCtttggaagaatcccagaacatattccagtctgtgctagcaaaacagtcctgtagcgtagcatccgtgtcatctgaccacttctgtattgagcgagtcaccggtacttcctgctttagtttttgcttgtaaataGGAATCAAttaggatataattatggtcagatttggaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1880728 True 827 lncRNA 0.45 1 58969093 58969919

Neighbor

gene id symbol gene type direction distance location
prlh2r LOC106608506 coding upstream 64928 58895252 ~ 58904165 (+)
LOC110498202 LOC106608562 coding upstream 76352 58883806 ~ 58892741 (+)
disp2 disp2 coding upstream 100120 58855731 ~ 58868973 (+)
degs2 degs2 coding upstream 320341 58639045 ~ 58648752 (+)
mis18bp1 mis18bp1 coding upstream 343167 58606103 ~ 58625926 (+)
LOC110498208 LOC106608166 coding downstream 45544 59015463 ~ 59022319 (+)
LOC110498210 osr1 coding downstream 250117 59220036 ~ 59227518 (+)
rdh14a LOC106607934 coding downstream 513023 59482942 ~ 59488394 (+)
LOC110498214 LOC106607310 coding downstream 769639 59739558 ~ 59760715 (+)
LOC110498234 LOC106607246 coding downstream 804049 59773968 ~ 59799587 (+)
G1644060 NA non-coding upstream 653 58968240 ~ 58968440 (+)
G1644058 NA non-coding upstream 924 58967935 ~ 58968169 (+)
G1644039 NA non-coding upstream 7513 58959486 ~ 58961580 (+)
G1644035 NA non-coding upstream 14246 58953790 ~ 58954847 (+)
G1644019 NA non-coding upstream 30786 58937899 ~ 58938307 (+)
G1644064 NA non-coding downstream 407 58970326 ~ 58970585 (+)
G1644074 NA non-coding downstream 21504 58991423 ~ 58991762 (+)
G1644076 NA non-coding downstream 25297 58995216 ~ 58996511 (+)
G1644105 NA non-coding downstream 41386 59011305 ~ 59011508 (+)
G1644139 NA non-coding downstream 94181 59064100 ~ 59064344 (+)
LOC110498189 klhdc1 other upstream 670858 58293310 ~ 58298259 (+)
G1642993 LOC106611338 other upstream 792608 58164477 ~ 58176485 (+)
G1642565 NA other upstream 1286540 57656349 ~ 57682553 (+)
G1642062 NA other upstream 1692316 57275053 ~ 57276777 (+)
G1641935 NA other upstream 1825168 57135826 ~ 57143925 (+)
G1644123 NA other downstream 84604 59054523 ~ 59057223 (+)
G1644280 NA other downstream 226765 59196684 ~ 59197013 (+)
G1644569 NA other downstream 638681 59608600 ~ 59609394 (+)
G1644651 NA other downstream 778065 59747984 ~ 59748345 (+)
LOC110498402 LOC106604468 other downstream 1413602 60382983 ~ 60392450 (+)

Expression


Co-expression Network