G1645283 (cssa01h8orf74)


Basic Information

Item Value
gene id G1645283
gene name cssa01h8orf74
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 60280553 ~ 60283213 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1882160
GCCCTCCTAGGCCCATGCCCTCCTAGGCCCATGCCCtcctaggcccacccatggctgcacccctgctcagtcatgtgaaatccatagattagggcctaatttgatttgattttgagtcCTTATTTGGACTATTACAATAAATGTATAATACAATCACATTTTCACAAAAGCACACTGTTACAAACAGACATGATACACTGACATATTGACCAGATAAATACtcttaattcatttatttcaattgactgattttcttatatgaactgtaactcagcaaaatcttagaaattgttgcatgttgtgtttatattcttgttcagtgtACTTTATTACTGATTGTCTTCCCCCCTCTCACCTCATCTTGGTTTTAGCTATGTGTATGGCCCCGGTGGGATCCTTCGATTGTGTgaggtcagggtgtgtgtgtgtgtgtggtcagggtGTATAGAGTTCTCCCCGGTGGTAAGGGCTGTGTGTTGCAGGCTGAGCTCCAGTAGGTCATGCACCAGGCTACTCTCCTTCAGCAGCCTCCCCATCAGCAGCTCTCCTGTGGCCCTCACAGTAGACCGCACTAGGTCTGCCAC
>TU1882155
TGTTACAAACAGACATGATACACTGACATATTGACCAGATAAATACtcttaattcatttatttcaattgactgattttcttatatgaactgtaactcagcaaaatcttagaaattgttgcatgttgtgtttatattcttgttcagtgtACTTTATTACTGATTGTCTTCCCCCCTCTCACCTCATCTTGGTTTTAGCTATGTGTATGGCCCCGGTGGGATCCTTCGATTGTGTgaggtcagggtgtgtgtgtgtgtgtggtcagggtGTATAGAGTTCTCCCCGGTGGTAAGGGCTGTGTGTTGCAGGCTGAGCTCCAGTAGGTCATGCACCAGGCTACTCTCCTTCAGCAGCCTCCCCATCAGCAGCTCTCCTGTGGCCCTCACAGTAGACCGCACTAGGTCTGCCAC
>TU1882157
TGTTACAAACAGACATGATACACTGACATATTGACCAGATAAATACtcttaattcatttatttcaattgactgattttcttatatgaactgtaactcagcaaaatcttagaaattgttgcatgttgtgtttatattcttgttcagtgtACTTTATTACTGATTGTCTTCCCCCCTCTCACCTCATCTTGGTTTTAGCTATGTGTATGGCCCCGGTGGGATCCTTCGATTGTGTgaggtcagggtgtgtgtgtgtgtggtcagggtGTATAGAGTTCTCCCCGGTGGTAAGGGCTGTGTGTTGCAGGCTGAGCTCCAGTAGGTCATGCACCAGGCTACTCTCCTTCAGCAGCCTCCCCATCAGCAGCTCTCCTGTGGCCCTCACAGTAGACCGCACTAGGTCTGCCAC
>TU1882162
TGTTACAAACAGACATGATACACTGACATATTGACCAGATAAATACtcttaattcatttatttcaattgactgattttcttatatgaactgtaactcagcaaaatcttagaaattgttgcatgttgtgtttatattcttgttcagtgtACTTTATTACTGATTGTCTTCCCCCCTCTCACCTCATCTTGGTTTTAGCTATGTGTATGGCCCCGGTGGGATCCTTCGATTGTGTgaggtcagggtgtgtgtgtgtgtgaggtcagggtgtgtgtgtgtgtggtcagggtGTATAGAGTTCTCCCCGGTGGTAAGGGCTGTGTGTTGCAGGCTGAGCTCCAGTAGGTCATGCACCAGGCTACTCTCCTTCAGCAGCCTCCCCATCAGCAGCTCTCCTGTGGCCCTCACAGTAGACCGCACTAGGTCTGCCACCTCCTGGAGAAACAATACAATTTCATACAGTACACAGTGGTGTtgctcaattccatttcaactcagtcgattcaggaagtaaactgaaactCCAATTTCGAATTCCAAATTGATCTTATAGGAGACATTGAGGAAAATTGGAATTTAAATGGAAATtcagtttactttctgaattgactgcatacaaaaataaattgaccacaatctggggtggtgatggtgtgtgtgtcggtgCGTGCGTGGATGCGTGTGTTTAGAGTGTGTGTCTACCTCTCTGTCGAGTCTGCGGTCATTTAATGTGTCCAatatgacctctgacccctgtggcccctcctcctctctgagcCTCCGGAGTTCCTCCCTCTTCTGTTGCTTGGCAACCTGTAGCAGGGCACACACACGCTGGCGCTCCAACGCACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCAACATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCAACATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACAGACTCATCACCACCCTGAGACAGAACAGACTCATCATCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGATCACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCATCACCCTGAAAGAGAATGTAAATGCGTACATACACATGGACacatacacatccacacacacacacacccacccacacacacacttcctgtatCACCTGTGCCAGGGGGAGGGGTGTTGGGGGCACATGAACCTCCAGGTGTTTCTGATTGATTGACCGGTGACTGGTCCCGCCCACCACAGCTTGTAG
>TU1882159
CTGTCGAGTCTGCGGTCATTTAATGTGTCCAatatgacctctgacccctgtggcccctcctcctctctgagcCTCCGGAGTTCCTCCCTCTTCTGTTGCTTGGCAACCTGTAGCAGGGCACACACACGCTGGCGCTCCAACGCACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGATCACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCATCACCCTGAAAGAGAATGTAAATGCGTACATACACATGGACacatacacatccacacacacacacacccacccacacacacacttcctgtatCACCTGTGCCAGGGGGAGGGGTGTTGGGGGCACATGAACCTCCAGGTGTTTCTGATTGATTGACCGGTGACTGGTCCCGCCCACCACAGCTTGTAG
>TU1882161
CTGTCGAGTCTGCGGTCATTTAATGTGTCCAatatgacctctgacccctgtggcccctcctcctctctgagcCTCCGGAGTTCCTCCCTCTTCTGTTGCTTGGCAACCTGTAGCAGGGCACACACACGCTGGCGCTCCAACGCACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGACAGACAGAACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCAACATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACTCAACATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACAGACTCATCACCACCCTGAGACAGAACAGACTCATCACCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCATCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGATCACACTCATCACCACCCTGAGACAGAACACACTCATCACCACCCTGAGACAGAACACACTCATCATCACCCTGAAAGAGAATGTAAATGCGTACATACACATGGACacatacacatccacacacacacacacccacccacacacacacttcctgtatCACCTGTGCCAGGGGGAGGGGTGTTGGGGGCACATGAACCTCCAGGTGTTTCTGATTGATTGACCGGTGACTGGTCCCGCCCACCACAGCTTGTAGCAGTCGTTGACTAAATGTCAGACATGAACAGAACTCTGTGATACTTACCATTACATCATAGTCGAAGAAAAAACATGAGCTGACGCACACCCAGAGAAAATTATTTTATGTAGGGGTTCTGACTAACGGCAAATAAACTATAAGCTATCAAAAATAAAGAGAGTCCCACActctatatataaactcccagtaatttattggttACCTAGTGACACAAgtgtcagacaggaagtggaagACTGCTTTGTGGTGGGCAGGAGGTAGGCGGGGCAAACACTTTGTCAGCCAATCTGAAATTAGGGCTAGCACTCTGGGCGG

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1882160 False 584 lncRNA 0.46 2 60280553 60281157
TU1882155 False 409 lncRNA 0.45 2 60280728 60281157
TU1882157 False 407 lncRNA 0.45 2 60280728 60281157
TU1882162 False 2002 lncRNA 0.48 5 60280728 60282895
TU1882159 False 885 lncRNA 0.52 2 60281432 60282895
TU1882161 True 1533 lncRNA 0.49 3 60281432 60283213

Neighbor

gene id symbol gene type direction distance location
LOC110498222 LOC106603387 coding upstream 257937 59996525 ~ 60022616 (+)
LOC110510484 LOC106607199 coding upstream 318836 59865592 ~ 59961717 (+)
ankef1b LOC106609265 coding upstream 440697 59814601 ~ 59839856 (+)
LOC110498234 LOC106607246 coding upstream 480966 59773968 ~ 59799587 (+)
LOC110498214 LOC106607310 coding upstream 519838 59739558 ~ 59760715 (+)
LOC110498212 rp1l1 coding downstream 28246 60311459 ~ 60330337 (+)
fndc4b LOC106604723 coding downstream 74835 60358048 ~ 60375297 (+)
LOC110498402 LOC106604468 coding downstream 99770 60382983 ~ 60392450 (+)
plaat1l LOC106611413 coding downstream 115647 60398860 ~ 60402461 (+)
LOC118941500 NA coding downstream 119246 60402459 ~ 60405097 (+)
G1645282 NA non-coding upstream 1704 60278615 ~ 60278849 (+)
G1645263 NA non-coding upstream 25608 60254106 ~ 60254945 (+)
G1645217 NA non-coding upstream 96560 60175434 ~ 60183993 (+)
G1645189 NA non-coding upstream 127700 60123169 ~ 60152853 (+)
G1645180 NA non-coding upstream 157441 60114788 ~ 60123112 (+)
G1645308 NA non-coding downstream 54953 60338166 ~ 60338669 (+)
G1645311 NA non-coding downstream 71394 60354607 ~ 60355983 (+)
G1645329 LOC106604359 non-coding downstream 84951 60368164 ~ 60446671 (+)
G1645335 NA non-coding downstream 87105 60370318 ~ 60370669 (+)
G1644651 NA other upstream 532208 59747984 ~ 59748345 (+)
G1644569 NA other upstream 671159 59608600 ~ 59609394 (+)
G1644280 NA other upstream 1083540 59196684 ~ 59197013 (+)
G1644123 NA other upstream 1223330 59054523 ~ 59057223 (+)
LOC110498189 klhdc1 other upstream 1982318 58293310 ~ 58298259 (+)
chrna2a LOC103467111 other downstream 189910 60462967 ~ 60475546 (+)
LOC110498236 LOC106603790 other downstream 258823 60541955 ~ 60546243 (+)
G1645443 NA other downstream 432720 60715933 ~ 60718611 (+)

Expression


Co-expression Network