G1646232


Basic Information

Item Value
gene id G1646232
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048583.1
NCBI id CM023237.2
chromosome length 67237266
location 61362456 ~ 61415786 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU1883413
CGTCGACTTCAAAACGCTTCCGTAAAATATTCCACTCCGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGAGTATCCCTAAAGCAGTGTGGTCGTATCAGCCCCCCATGTTGGACTAAACAATTTCAACTCTACACAAGTGAAAACCCCAAATTTCTAAAGATCCTCTATTTGCCAAACTAGAGGGACATGAAGTCTGACTCCTTCCTCAACATGTGGACCTGCCCTGAGGATGTTGGACACCACTGTTACACCTTCAGCCTTGTTGATTTCCTGTCAGACTGGTTGTTTTTCAACTCCATTCCACGGACGGACTGACCTGAACTGAACTTTTACCAGAACAGGAACACAATGTTCAACAGACTCTACTCAGACTGGTCGTCTTTGAACtcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctctcctcaccagTGGACTGACTACTGAGACTGGTTGTGAGGTCACAGGAAATAGAGTGATCTGTTAGGAGGGATGCAACATTGTAATCCTGATTTAGATGATGGTTATAAGGAGAGTTCAGGTCGTAACCAGTCCACTGAGATGAATGTAGATGTCGACACCCTGGCCAATATAAAAGGCTTTGGAGAGGGACCACGCTTTCAGGAGAAGgataactgacatttactcctgaggtgtctgacttgttgcaccctcgacaaccactgtgattattattatttgaccctgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctacctgcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccgtgcttctacacctacattgcttgctgtttggggttttaggctgggtttctgtacaggctgggtttctgaaagAGATAtgagctgatgtacgaagggctatataaataaatttgatttgataacaaggccttgtccagaaacaacccccagCCCTTACCTCCAAGGCACCAATGTAACATAACTTTACactgtcccctcgcccataccggggcgcgaaccagggaccctctgcacacatcaacaacagtcacccctcgaagcatcgttacccatcgctccacaaaagccgcggctgtATGTAAAAGAAATCCCTGATTGTATTAAATAATGTATGACATTCCCTTCATTAAAGTTTTTTTGTGC
>TU1883415
CGTCGACTTCAAAACGCTTCCGTAAAATATTCCACTCCGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGCAGAGTATCCCTAAAGCAGTGTGGTCGTATCAGCCCCCCATGTTGGACTAAACAATTTCAACTCTACACAAGTGAAAACCCCAAATTTCTAAAGATCCTCTATTTGCCAAACTAGAGGGACATGAAGTCTGACTCCTTCCTCAACATGTGGACCTGCCCTGAGGATGTTGGACACCACTGTTACACCTTCAGCCTTGTTGATTTCCTGTCAGACTGGTTGTTTTTCAACTCCATTCCACGGACGGACTGACCTGAACTTTTACCAGAACaggaacacaatgttcaacagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctctcctcaccagTGGGACTGACTACTCAGACTGGTCGTCTTTGAACtcaagaggaacacaatgttcatcagactctactcagacttgtcgtctttgaactcaagaggaacacaatgttcaacagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcaacagactctactcagactggtcatctttgaactcaagaggaacacaatgttcaacagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcaacagactctctcctcaccagTGGGACTGACTACTCAGACTGGTCGTCTTTGAACtcaagaggaacacaatgttcaacagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcaacagactctctcctcaccagTGGACTGACTACTGAGACTGGTTGTGAGGTCACAGGAAATAGAGTGATCTGTTAGGAGGGATGCAACATTGTAATCCTGATTTAGATGATGGTTATAAGGAGAGTTCAGGTCGTAACCAGTCCACTGAGATGAATGTAGATGTCGACACCCTGGCCAATATAAAAGGCTTTGGAGAGGGACCACGCTTTCAGGAGAAGgataactgacatttactcctgaggtgtctgacttgttgcaccctcgacaaccactgtgattattattatttgaccctgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccgtgcttctacacctacattgcttgctgtttggggttttaggctgggtttctgtacaggctgggtttctgaaagAGATAtgagctgatgtacgaagggctatataaataaatttgatttgataacaaggccttgtccagaaacaacccccagCCCTTACCTCCAAGGCACCAATGTAACATAACTTtacaccgtcccctcgcccatacccggggcgcgaaccagggaccctctgcacacatcaacaacagtcacccctcgaagcatcgttacccatcgctccacaaaagccgcggctgtATGTAAAAGAAATCCCTGATTGTATTAAATAATGTATGACATTCCCttcattaaagtttttttt
>TU1883414
AGGTGAAAATAGGGAGACAATGTATTTGTATTAAGGGTTTAGTCTTTGAATGGTGGATTTGTGCAGATTCCCTTGGCCTTCCTTCCTGTTTAACTCTTGATGTCTGGTCTTGCTGTAGAGACTGAACACAGCAGGATTATTGCTagactttttttttgttttcttaactATTTTACGACGTATTCATTGACGAAACGAACTCCACTACAAATACAAGCCTCAATAGAAGAACCTCTGATCCTTTTTTAGTTAGAAATAAAAAGacaaagatgttttattttctaaGAGTATGTAGCATTAGTGAAATAACCTACTATGATggatcatattttttattttttatcagtgggctattttgttttttttgttcctTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTCTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGTCTTACTCTTACCAATATGTTCCTTTTTTGAACAAGGAGTTATTCTACCGTAAACTAAgattatttttatgtattttttcgtTTTGTTTTTAAAGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGCAGAGTATCCCTAAAGCAGTGTGGTCGTATCAGCCCCCCA
>TU1883408
GAGACAATGTATTTGTATTAAGGGTTTAGTCTTTGAATGGTGGATTTGTGCAGATTCCCTTGGCCTTCCTTCCTGTTTAACTCTTGATGTCTGGTCTTGCTGTAGAGACTGAACACAGCAGGATTATTGCTagactttttttttgttttcttaactATTTTACGACGTATTCATTGACGAAACGAACTCCACTACAAATACAAGCCTCTATAGAAGAACCTCTGATCCTTTTTTAGTTAGAAATAAAAAGacaaagatgttttattttctaaGAGTATGTAGCATTAGTGAAATAACCTACTATGATggatcatattttttattttttatcagtgggctattttgttttttttgttcctTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTCTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGTCTTACTCTTACCAATATGTTCCTTTTTTGAACAAGGAGTTATTCTACCGTAAACTAAgattatttttatgtattttttcgtTTTGTTTTTAAAGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGAGTATCCCTAAAGCAGTGTGGTCGTATCAGCCCCCCA
>TU1883411
GAGACAATGTATTTGTATTAAGGGTTTAGTCTTTGAATGGTGGATTTGTGCAGATTCCCTTGGCCTTCCTTCCTGTTTAACTCTTGATGTCTGGTCTTGCTGTAGAGACTGAACACAGCAGGATTATTGCTagactttttttttgttttcttaactATTTTACGACGTATTCATTGACGAAACGAACTCCACTACAAATACAAGCCTCTATAGAAGAACCTCTGATCCTTTTTTAGTTAGAAATAAAAAGacaaagatgttttattttctaaGAGTATGTAGCATTAGTGAAATAACCTACTATGATggatcatattttttattttttatcagtgggctattttgttttttttgttcctTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTCTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGTCTTACTCTTACCAATATGTTCCTTTTTTGAACAAGGAGTTATTCTACCGTAAACTAAgattatttttatgtattttttcgtTTTGTTTTTAAAGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGCAGAGTATCCCTAAAGCAGTGTGGTCGTATCAGCCCCCCA
>TU1883406
ATGGAGGGCTACGCTAGCGTTTCTTGGACCAATTCAGAAATTGGTACACAAGAAGGAGTAGCACTAGTCTTTTTAGGATTAGGTGAAAATAGGGAGACAATGTATTTGTATTAAGGGTTTAGTCTTTGAATGGTGGATTTGTGCAGATTCCCTTGGCCTTCCTTCCTGTTTAACTCTTGATGTCTGGTCTTGCTGTAGAGACTGAACACAGCAGGATTATTGCTagacttttttttgttttcttaactATTTTACGACGTATTCATTGACGAAACGAACTCCACTACAAATACAAGCCTCTATAGAAGAACCTCTGATCCTTTTTTAGTTAGGAATAAAAAGacaaagatgttttattttctaaGAGTATGTAGCATTAGTGAAATAACCTACTATGATggatcattttttaaattttttatcaGTGGgctattttgttttttttgttcctTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTCTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTGAACAGGGAGTTATTCTACCGTAAACTAAgattatttttatgtattttttcgtTTTGTTTTTAAAGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGCAGAGTATCCCTAAAGCAGCGTGGTCGTATCAGCCCCCCATGTTGGACTAAACTCTACACAAGTGAAAACCCCAAATCCCTAAAGATCCTCTATTTGCCAAACTAGAGGGACATGAAGTCTGACTCCTTCCTCAACATGTGGACCTGCCCTGAGGATGTTGGACACCACTGTTACACCTTCAGCCTTGTTGATTTCCTGTCAGACTGGTTGTTTTTCAACTCCATTCCATGGACGGACTGACCTGAACTTTTACCAGAACAGGAACACAATGTTCAACAGACTCTACTCAGACTGGTCGTCTTTGAACtcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctctcctcaccagTGGACTGACTACTGAGACTGGTTGTGAGGTCACAGGAAATAGAGTGATCTGTTAGGAGGGATGCAACATTGTAATCCTGATTTAGATGATGGTTATAAGGAGAGTTCAGGTCGTAACCAGTCCACTGAGATGAATGTAGATGTCGACACCCTGGCCAATATAAAAGGCTTTGGAGAGGGACCACGCTTTCAGGAGAAGgataactgacatttactcctgaggtgtctgacttgttgcaccctcgacaaccactgtgattattattatttgaccctgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctacctgcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccgtgcttctacacctacattgcttgctgtttggggttttaggctgggtttctgtacaggctgggtttctgaaagAGATAtgagctgatgtacgaagggctatataaataaatttgatttgataacaaggccttgtccagaaacaacccccagCCCTTACCTCCAAGGCACCAATGTAACATAACTTTACactgtcccctcgcccataccggggcgcgaaccagggaccctctgcacacatcaacaacagtcacccctcgaagcatcgttacccatcgctccacaaaagccgcggctgtATGTAAAAGAAATCCCTGATTGTATTAAATAATGTATGACATTCCCTTCATTAAAGTTTTTTTGTGC
>TU1883410
ATGGAGGGCTACGCTAGCGTTTCTTGGACCAATTCAGAAATTGGTACACAAGAAGGAGTAGCACTAGTCTTTTTAGGATTAGGTGAAAATAGGGAGACAATGTATTTGTATTAAGGGTTTAGTCTTTGAATGGTGGATTTGTGCAGATTCCCTTGGCCTTCCTTCCTGTTTAACTCTTGATGTCTGGTCTTGCTGTAGAGACTGAACACAGCAGGATTATTGCTagacttttttttgttttcttaactATTTTACGACGTATTCATTGACGAAACGAACTCCACTACAAATACAAGCCTCTATAGAAGAACCTCTGATCCTTTTTTAGTTAGGAATAAAAAGacaaagatgttttattttctaaGAGTATGTAGCATTAGTGAAATAACCTACTATGATggatcattttttaaattttttatcaGTGGgctattttgttttttttgttcctTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTCTTACCAATATGTTCCTTTTTTTGTGGAAAGATTTAGAGACTGTATCCAGACCTGCCTTACTGTTACCAATATGTTCCTTTTTTGAACAGGGAGTTATTCTACCGTAAACTAAgattatttttatgtattttttcgtTTTGTTTTTAAAGGATACTTCCTCTGACATTCTTAGAGCTGTCATTTTATTGTGAGGAACTGCAGTTCGATCGGAATAGTTGTTCTGTTTTTGTCCTCTGTTTTGTGAGTGACCCTCTCACTCAGTCAACTCGTCTCAGTGCACAAGTCTCCCCTTCTCCAGACACCGCGTATGAATCAGAATCCGTAGCTAGTTGTGACACGTGAGCCTCTGGATGAAAAGAGTATCCCTAAAGCAGCGTGGTCGTATCAGCCCCCCATGTTGGACTAAACTCTACACAAGTGAAAACCCCAAATCCCTAAAGATCCTCTATTTGCCAAACTAGAGGGACATGAAGTCTGACTCCTTCCTCAACATGTGGACCTGCCCTGAGGATGTTGGACACCACTGTTACACCTTCAGCCTTGTTGATTTCCTGTCAGACTGGTTGTTTTTCAACTCCATTCCATGGACGGACTGACCTGAACTTTTACCAGAACAGGAACACAATGTTCAACAGACTCTACTCAGACTGGTCGTCTTTGAACtcaagaggaacacaatgttcatcagactctactcagactggtcgtctttgaactcaagaggaacacaatgttcatcagactctctcctcaccagTGGACTGACTACTGAGACTGGTTGTGAGGTCACAGGAAATAGAGTGATCTGTTAGGAGGGATGCAACATTGTAATCCTGATTTAGATGATGGTTATAAGGAGAGTTCAGGTCGTAACCAGTCCACTGAGATGAATGTAGATGTCGACACCCTGGCCAATATAAAAGGCTTTGGAGAGGGACCACGCTTTCAGGAGAAGgataactgacatttactcctgaggtgtctgacttgttgcaccctcgacaaccactgtgattattattatttgaccctgctggtcatttatgaacatttgaacatcttggccatgttctgttataatctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctatccagcacagccagaagaggactggccacccctcatagcctggttcctctctacccggcacagccagaagaggactggccacccctcatagcctggttcctctctacctgcacagccagaagaggactggccacccctcatagcctggttcctctctaggtttcttcctaggttctggcctttctagggagtttttcctagccaccgtgcttctacacctacattgcttgctgtttggggttttaggctgggtttctgtacaggctgggtttctgaaagAGATAtgagctgatgtacgaagggctatataaataaatttgatttgataacaaggccttgtccagaaacaacccccagCCCTTACCTCCAAGGCACCAATGTAACATAACTTTACactgtcccctcgcccataccggggcgcgaaccagggaccctctgcacacatcaacaacagtcacccctcgaagcatcgttacccatcgctccacaaaagccgcggctgtATGTAAAAGAAATCCCTGATTGTATTAAATAATGTATGACATTCCCTTCATTAAAGTTTTTTTGTGC

Function

NR:

description
PREDICTED: uncharacterized protein LOC106588115

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU1883413 False 1666 lncRNA 0.47 5 61362456 61415786
TU1883415 False 2078 lncRNA 0.45 6 61362456 61401782
TU1883414 False 940 lncRNA 0.37 3 61367218 61382642
TU1883408 False 862 lncRNA 0.37 2 61381602 61382642
TU1883411 False 865 lncRNA 0.37 2 61381602 61382642
TU1883406 False 2263 lncRNA 0.44 3 61412300 61415786
TU1883410 True 2260 lncRNA 0.44 3 61412300 61415786
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498404 LOC105025554 coding upstream 57325 61242422 ~ 61308910 (+)
xdh xdh coding upstream 425259 60888364 ~ 60937197 (+)
LOC110498232 LOC106605409 coding upstream 495491 60849843 ~ 60866965 (+)
LOC100136771 pomc coding upstream 579946 60779941 ~ 60782510 (+)
LOC110498226 LOC106603826 coding upstream 792717 60556736 ~ 60569739 (+)
LOC110498259 LOC106603387 coding downstream 284919 61700705 ~ 61707803 (+)
trim9 trim9 coding downstream 330352 61746138 ~ 61852881 (+)
pygl LOC106611459 coding downstream 447851 61863637 ~ 61899051 (+)
LOC118941521 NA coding downstream 465544 61881330 ~ 61882333 (+)
nin LOC106611458 coding downstream 508540 61924326 ~ 62009301 (+)
G1646229 NA non-coding upstream 7100 61355010 ~ 61355356 (+)
G1646224 NA non-coding upstream 25192 61336646 ~ 61337264 (+)
G1646222 NA non-coding upstream 32019 61328513 ~ 61330437 (+)
G1646221 NA non-coding upstream 41618 61319047 ~ 61320838 (+)
G1646126 NA non-coding upstream 64103 61297924 ~ 61298353 (+)
G1646254 NA non-coding downstream 2120 61417906 ~ 61419545 (+)
LOC118941510 LOC106603467 non-coding downstream 11186 61407641 ~ 61430060 (+)
G1646259 NA non-coding downstream 22395 61438181 ~ 61440057 (+)
G1646260 NA non-coding downstream 25364 61441150 ~ 61441369 (+)
G1646271 NA non-coding downstream 40654 61456440 ~ 61483744 (+)
G1646225 NA other upstream 17302 61344787 ~ 61345154 (+)
G1646089 NA other upstream 159104 61200860 ~ 61203352 (+)
G1645444 NA other upstream 623499 60718758 ~ 60738957 (+)
G1645443 NA other upstream 643845 60715933 ~ 60718611 (+)
G1646294 NA other downstream 142255 61558041 ~ 61561084 (+)
G1646509 NA other downstream 728397 62144183 ~ 62145290 (+)
srsf5a LOC106611464 other downstream 1071215 62486921 ~ 62493719 (+)
G1647342 NA other downstream 1601169 63016955 ~ 63018688 (+)
G1647411 NA other downstream 1659363 63075149 ~ 63077143 (+)

Expression

G1646232 Expression in all Baseline Samples

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G1646232 Expression in each Bioproject

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G1646232 Expression in each Sample
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Co-expression Network