XLOC_035654 (mapre1a)


Basic Information

Item Value
gene id XLOC_035654
gene name mapre1a
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007119.7
NCBI id CM002892.2
chromosome length 54304671
location 23381892 ~ 23390368 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00069913
tttgacgtgACTACTTTTATTTTGTTAGAAAGCGGTTTGATATAGTAGGttgatgacttttattttgacatctGGGGCTAGTTATCGAGCGTTTGCTGTGGTTTCAggcttgctgctgctgctgaagcGGCGCTTTACGAACGACACGCCGGTGAAACGGAAGATCCCGGCAGAGCGCGGACTTTCATAATTAAATGTAAGAAGAAACATTGATTTAATAGGCtttacacacttttttttgttttcacacgCCTTTTAATAGTAGTTTTGTTAATTTAAACGACgcgttgtttgttttattggtaGCGTAAACGTTATCGTTCAAAACTTCAGCGGATTAAAAAGCAACGGTTTTCCGTGACGCGTTAACTGTTTATATGAAGTTAAACAACACTAACAGACTAGTTTGACGCTCAAACCAGGGGTCATTCGGCATCTAACGTTAACAAAGTTCACAAAAAAGTAACTTGATTTTGTGGatacaaatataaaaccaaacaTTTTAATTGACATCAAGTAACATTCGGAAGTAAAAATTATGGTGGTGTAGGTTGAGGGTTAAAGGGTGTGAATGTATGTTTAAGGAAATGAGGCTTAACGCAATCTCTCTTCTCGTTCTCTTCTGCAACATCAGCGGAAAGAATATCTCTATCAGCTTTAAATCCTCGGTTTTGCCTCAGTCATGGCTGTGAACGTGTTCTCGACATCGGTGACAAGTGAAAACCTCAGCCGCCATGACATGCTCACATGGATAAACGAGTCTTTACAGATGAACCATGCCAAGATCGAGCAGCTGTGCACAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACAAGATATTCCAACCAATCAGAGTCCAGCAGCAGCAGCCACGGCTAACAAGGCAAGGAAACCTAGCTCGGCTCCACAGCGTTCAGCAGCAGCACCTAAATCTACAGCAAAAACATCTCCTGCGGCAACGAGAGGCACAGGCAGCGGTGATGAAGAAAAAGGCGCACTTACTCAGATGATAAATGACTTGAAGGCCACCATTGCTGACATGGAAAAGGAAAGGGATTTCTACTTCGGCAAGTTGAGAAACATCGAGCTCATCTGTCAAGAGAAAGAGGGTGAGGGTGATCCAACACTGCAGAAGATCGTGGATATTCTGTACGCCACAGATGAAGGGTTTGTAATCCCGGAAGATGAGGGTGGTGAACCAGAAGAGTTTTGACCAATCCATGGGGTGAccgtttacattttttattattaaagacccCGCTGGACACTCGAATGCACATACTGGCTTATTCCTGCTGTTCTGCTGCACTTGCCTTCAGTCCATCATTTTGGACTTTGACTTTTGAATGTCTTTTTATTCAGGGACGTTTCTATACCTTGAATTCTCAGCTTTTTTTATTGACCATCgaaacaaaactatttttgtgaatgaaaaaataaagtactTATCAAAGTCTGTTTCTATAAAGTAGTCCACTTAGAACTGAGTCCAACCTGCCAACAATGAAACCGACATGAGCAAGCCACTTTTATGAGTATAGGTTAGTGCATAACATTGCTGTTATTATCTAGTGTCTGATCTGCACATTTGACTGCTAGCTGACCATTTGGCAGCGACGCTCACTTCCTCTAATTAACTCTGAAGCAGGATGTGTGTCAATGGTTTGCATTTCCCTTTTATGAGCACATGAAGCAATGAGGAACCACTTGACAATAACAAGACGAAGAGCATATGTTTGAGCTGGTTGACGCCGCTTTCTACTTGTCTTTATCCACAAAGTCTTTAAGGGAATATTTttgcaaaaactgaaaatttcaTAATTGACCCCCAGGTCATCAGAGatttgagttgttgttttttccataaAGGAAAGTTTTGGAggaatatttttaatacatttaatgcaAGTGAAGGCTCAGAGCAGACCATGTTTTATCATTGAAATCCATACTTAAGCAGCATACTTCCACCTTTACAATGTGCATAGGTCATGCAAGAGGCTGTGAACTGCTGTTTCATGAATGTGTTTGtaaaattattgtcatttttattgaaaaatgacTGATCGTTtcattgtatactgtatgttttgtggATTTCCTTAAAGCTGCCTCAATAGGGATTTTGGACCAACAAAAGTATTCTTTGATGAGCActattcacttttttttacttaaaaggatagttcaccccaaaatgaaatcCTTCACTTGCTCCAAATCATTGTTTTGTATTCCGTTACACAAAAGATAATTGTTGGAAAAATCCAACCATTTACATCAATAAAACAAATGCGAAGAAAGTTGAAGGATACAGGttttgaacatttttcaaaatatactaAACTAAGAAAAAAACTTTCATACATCTTGAATGGTCAAACGAGCCAAACGTTTTTATTTTGGCGTGAACCTTTTAAAGTTGTAGGTATCAGGCAGGTTTTGATGCTAAATCTTAAAGTAGCATGTATTATCTTACACGTATATCCACAGATCTGCTATTCATTAgtgtaaaataatacaaaatgttttactttaCAAGAGATAAACCAGTCCGCGTGTTATAATTTTGAGGCACAAGTTATTTTTCCCATGGTTTTGTTTTTCTGGGCATCTGAGAAACCGTGGGCTGGTCGTGGCAAGGCTTGATATCCAGCTTCTGGAGTCCGGGAACTTCCTCTCCCGCTTGAATCCTGCGGAAAACCTCTGGAAAAGAGAGAGACTGCGGCCCCTCTGCTTCTGCAGACTCCTGCACACCGACTGCGGCTTCATCCGGCTTTTCCATCGCTTAATTTACTTACTACCACAGCTCTGTGTTGGAGAATGAGAGGAAGTCTTTACTCACTTATCTAAGACTTAATTATTATATGTGATTCCCTGTTAATATAAATGACTTACTTATCAGGCTATCTTGAAAACTATGTGCATTTCAAATTAAACGAATAAGCACTTGTTTATTAAACGTAAGTAAATGTTATAAACATGAAAAGCTCCACACCGAAGCATGTTGTCCTAAAGTTTACAAAGTAACGTTGCATCTGTATCTAGACTTCCGTCTCCAGTCTGTTCTTCAGTGttggattttaaaataaaagtccctcAAATGCTCTGCTTTTTGCGTCCCAGCAAAACATTATAATAAGTAATAATGTGCCCTGTTAAGCTGATTTgtgtgattgtgtttttttttc
>TCONS_00069914
ttttattttgacatctGGGGCTAGTTATCGAGCGTTTGCTGTGGTTTCAggcttgctgctgctgctgaagcGGCGCTTTACGAACGACACGCCGGTGAAACGGAAGATCCCGGCAGAGCGCGGACTTTCATAATTAAATCGGAAAGAATATCTCTATCAGCTTTAAATCCTCGGTTTTGCCTCAGTCATGGCTGTGAACGTGTTCTCGACATCGGTGACAAGTGAAAACCTCAGCCGCCATGACATGCTCACATGGATAAACGAGTCTTTACAGATGAACCATGCCAAGATCGAGCAGCTGTGCACAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACAAGATATTCCAACCAATCAGAGTCCAGCAGCAGCAGCCACGGCTAACAAGGCAAGGAAACCTAGCTCGGATACAGGCATCACACCTGCAGTCAAGCCAATGGCCCCTGTTGCTCCACAGCGTTCAGCAGCAGCACCTAAATCTACAGCAAAAACATCTCCTGCGGCAACGAGAGGCACAGGCAGCGGTGATGAAGAAAAAGGCGCACTTACTCAGATGATAAATGACTTGAAGGCCACCATTGCTGACATGGAAAAGGAAAGGGATTTCTACTTCGGCAAGTTGAGAAACATCGAGCTCATCTGTCAAGAGAAAGAGGGTGAGGGTGATCCAACACTGCAGAAGATCGTGGATATTCTGTACGCCACAGATGAAGGGTTTGTAATCCCGGAAGATGAGGGTGGTGAACCAGAAGAGTTTTGACCAATCCATGGGGTGAccgtttacattttttattattaaagacccCGCTGGACACTCGAATGCACATACTGGCTTATTCCTGCTGTTCTGCTGCACTTGCCTTCAGTCCATCATTTTGGACTTTGACTTTTGAATGTCTTTTTATTCAGGGACGTTTCTATACCTTGAATTCTCAGCTTTTTTTATTGACCATCgaaacaaaactatttttgtgaatgaaaaaataaagtactTATCAAAGTCTGTTTCTATAAA
>TCONS_00069915
GTTATCGAGCGTTTGCTGTGGTTTCAggcttgctgctgctgctgaagcGGCGCTTTACGAACGACACGCCGGTGAAACGGAAGATCCCGGCAGAGCGCGGACTTTCATAATTAAATCGGAAAGAATATCTCTATCAGCTTTAAATCCTCGGTTTTGCCTCAGTCATGGCTGTGAACGTGTTCTCGACATCGGTGACAAGTGAAAACCTCAGCCGCCATGACATGCTCACATGGATAAACGAGTCTTTACAGATGAACCATGCCAAGATCGAGCAGCTGTGCACAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACAAGATATTCCAACCAATCAGAGTCCAGCAGCAGCAGCCACGGCTAACAAGGCAAGGAAACCTAGCTCGGCTCCACAGCGTTCAGCAGCAGCACCTAAATCTACAGCAAAAACATCTCCTGCGGCAACGAGAGGCACAGGCAGCGGTGATGAAGAAAAAGGCGCACTTACTCAGATGATAAATGACTTGAAGGCCACCATTGCTGACATGGAAAAGGAAAGGGATTTCTACTTCGGCAAGTTGAGAAACATCGAGCTCATCTGTCAAGAGAAAGAGGGTGAGGGTGATCCAACACTGCAGAAGATCGTGGATATTCTGTACGCCACAGATGAAGGGTTTGTAATCCCGGAAGATGAGGGTGGTGAACCAGAAGAGTTTTGACCAATCCATGGGGTGAccgtttacattttttattattaaagacccCGCTGGACACTCGAATGCACATACTGGCTTATTCCTGCTGTTCTGCTGCACTTGCCTTCAGTCCATCATTTTGGACTTTGACTTTTGAATGTCTTTTTATTCAGGGACGTTTCTATACCTTGAATTCTCAGCTTTTTTTATTGACCATCgaaacaaaactatttttgtgaatgaaaaaataaagtactTATCAAAGTCTGTTTCTATAAA
>TCONS_00069916
TGAAACGGAAGATCCCGGCAGAGCGCGGACTTTCATAATTAAATGTAAGAAGAAACATTGATTTAATAGGCtttacacacttttttttgttttcacacgCCTTTTAATAGTAGTTTTGTTAATTTAAACGACgcgttgtttgttttattggtaGCGTAAACGTTATCGTTCAAAACTTCAGCGGATTAAAAAGCAACGGTTTTCCGTGACGCGTTAACTGTTTATATGAAGTTAAACAACACTAACAGACTAGTTTGACGCTCAAACCAGGGGTCATTCGGCATCTAACGTTAACAAAGTTCACAAAAAAGTAACTTGATTTTGTGGatacaaatataaaaccaaacaTTTTAATTGACATCAAGTAACATTCGGAAGTAAAAATTATGGTGGTGTAGGTTGAGGGTTAAAGGGTGTGAATGTATGTTTAAGGAAATGAGGCTTAACGCAATCTCTCTTCTCGTTCTCTTCTGCAACATCAGCGGAAAGAATATCTCTATCAGCTTTAAATCCTCGGTTTTGCCTCAGTCATGGCTGTGAACGTGTTCTCGACATCGGTGACAAGTGAAAACCTCAGCCGCCATGACATGCTCACATGGATAAACGAGTCTTTACAGATGAACCATGCCAAGATCGAGCAGCTGTGCACAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACA
>TCONS_00069917
TCAGTCATGGCTGTGAACGTGTTCTCGACATCGGTGACAAGTGAAAACCTCAGCCGCCATGACATGCTCACATGGATAAACGAGTCTTTACAGATGAACCATGCCAAGATCGAGCAGCTGTGCACAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACAAGATATTCCAACCAATCAGAGTCCAGCAGCAGCAGCCACGGCTAACAAGGCAAGGAAACCTAGCTCGGATACAGGCATCACACCTGCAGTCAAGCCAATGGCCCCTGTTGCTCCACAGCGTTCAGCAGCAGCACCTAAATCTACAGCAAAAACATCTCCTGCGGCAACGAGAGGCACAGGCAGCGGTGATGAAGAAAAAGGCGCACTTACTCAGATGATAAATGACTTGAAGGCCACCATTGCTGACATGGAAAAGGAAAGGGATTTCTACTTCGGCAAGTTGAGAAACATCGAGCTCATCTGTCAAGAGAAAGAGGGTGAGGGTGATCCAACACTGCAGAAGATCGTGGATATTCTGTACGCCACAGATGAAGGGTTTGTAATCCCGGAAGATGAGGGTGGTGAACCAGAAGAGTTTTGAC
>TCONS_00069918
CTTTCAGCTTGAGCATCAATACATTACACACACGAGCATCAGTTCAGAGGTGCTGCTTACTGTCACTTTATGGACATGCTGTTCCCATCGTGTCTTCCACTGAAGAAAGTCAAGTTCCAGGCCAAACTCGAGCACGAATACATCCATAACTTCAAACTCCTTCAAGCCAGTTTTAAAAAGATGGGTGTTAGTAAAATTATTCCTGTTGATAAGCTTGTGAAGGGCAAGTTTCAGGACAACTTTGAGTTTGTGCAGTGGTTTAAAAAGTTCTTCGATGCAAACTATGATGGGAAGGAATATGATCCGGTGGCCGCTCGACAGGGACAAGATATTCCAACCAATCAGAGTCCAGCAGCAGCAGCCACGGCTAACAAGGCAAGGAAACCTAGCTCGGATACAGGCATCACACCTGCAGTCAAGCCAATGGCCCCTGTTGCTCCACAGCGTTCAGCAGCAGCACCTAAATCTACAGCAAAAACATCTCCTGCGGCAACGAGAGGCACAGGCAGCGGTGATGAAGAAAAAGGCGCACTTACTCAGATGATAAATGACTTGAAGGCCACCATTGCTGACATGGAAAAGGAAAGG

Function

symbol description
mapre1a Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE1 (microtubule associated protein RP/EB family member 1).

GO:

id name namespace
GO:0051225 spindle assembly biological_process
GO:1904825 protein localization to microtubule plus-end biological_process
GO:0035372 protein localization to microtubule biological_process
GO:0031110 regulation of microtubule polymerization or depolymerization biological_process
GO:0005815 microtubule organizing center cellular_component
GO:0051233 spindle midzone cellular_component
GO:0005874 microtubule cellular_component
GO:0005881 cytoplasmic microtubule cellular_component
GO:0035371 microtubule plus-end cellular_component
GO:0051010 microtubule plus-end binding molecular_function
GO:0008017 microtubule binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-6067 Predicted to enable microtubule plus-end binding activity. Predicted to be involved in protein localization to microtubule plus-end; regulation of microtubule polymerization or depolymerization; and spindle assembly. Predicted to act upstream of or within cell division. Predicted to be located in cytoplasm and microtubule. Predicted to be active in microtubule cytoskeleton. Orthologous to human MAPRE1 (microtubule associated protein RP/EB family member 1).

Ensembl:

ensembl_id ENSDARG00000042927

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00069913 False 3437 mRNA 0.39 6 23381892 23390368
TCONS_00069914 False 1261 mRNA 0.45 8 23381949 23388645
TCONS_00069915 False 1196 mRNA 0.45 7 23381972 23388645
TCONS_00069916 False 928 mRNA 0.40 3 23382044 23384008
TCONS_00069917 False 826 mRNA 0.47 7 23382568 23388391
TCONS_00069918 True 588 processed_transcript 0.47 6 23382732 23388145
Loading

Neighbor

gene id symbol gene type direction distance location
XLOC_035653 dnmt3ba coding upstream 344 23355484 ~ 23381548 (+)
XLOC_035652 CR762393.1 coding upstream 38894 23342883 ~ 23342998 (+)
XLOC_035651 NA coding upstream 116219 23260411 ~ 23265673 (+)
XLOC_035648 NA coding upstream 129284 23240267 ~ 23252608 (+)
XLOC_035655 si:dkey-16n15.6 coding downstream 476 23390844 ~ 23405105 (+)
XLOC_035656 foxp3b coding downstream 46043 23436411 ~ 23454577 (+)
XLOC_035657 NA coding downstream 72450 23462818 ~ 23472866 (+)
XLOC_035658 sema3gb coding downstream 94711 23485079 ~ 23553859 (+)
XLOC_035659 ccdc22 coding downstream 224764 23615132 ~ 23638031 (+)
XLOC_035649 NA non-coding upstream 136541 23242379 ~ 23245351 (+)
XLOC_035642 CR759927.1 non-coding upstream 250995 23128233 ~ 23130897 (+)
XLOC_035666 AL929282.1 non-coding downstream 390637 23781005 ~ 23781394 (+)
XLOC_035671 NA non-coding downstream 508355 23898723 ~ 23907373 (+)
XLOC_035673 CT573357.1 non-coding downstream 527220 23917588 ~ 23920716 (+)
XLOC_035674 AL928881.1 non-coding downstream 673842 24064210 ~ 24064295 (+)

Expression

Expression of XLOC_035654(mapre1a) in the Zebrafish Sample from each Developmental Stage of PRJEB12982

Boxplot with 18 boxes. Box plot charts are typically used to display groups of statistical data. Each data point in the chart can have up to 5 values: minimum, lower quartile, median, upper quartile, and maximum.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Expression of XLOC_035654(mapre1a) in the Zebrafish Sample of PRJEB12982

Bar chart with 360 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.

Co-expression Network