LOC110498792 (LOC106578302)


Basic Information

Item Value
gene id LOC110498792
gene name LOC106578302
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 662693 ~ 712981 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955580.1
TCTACGCTTAGTTCGGTTTGTGTCTCCTCTTTCAAAGGGTGCAAGAATGTGAACTACTCGTCCAACAAAGCATGTTACACTGCAGACATGACTTGTCCGTCGGAAAGCGAGAAAATCGTGATAAACTGCGGGGGGATGCGGCATGAAACCTATCGAAGCACACTAAAAACGTTGCCCGGTACCCGCTTATCTTGGCTTACCGAGTCAGACGCCTTTAGCAACTTCGATTACGACCACAGAAACGACGAGTTCTTCTTCGATCGCCACCCATCCGTCTTTTCATTCATCCTCAACTATTACCGCACAGGTAAATTGCACTGTCCGAAAGATGTGTGCGGCCCGCTGTTCGAAGAGGAGCTGGCATTCTGGGGCATCGATGAGACGGACGTGGAGGCGTGTTGCTGGATGAATTACCGCCAGCACAGGGACGCAGAGGAGGCGTTGGACAGCTTTGAGAATCCCGAACCGGAGTTGGCAGAGGATGACCCAGCGCTACCAGGACATGCATGGGACATGAAAAGACTGTGCTTGCATGAGGACGGAAGGAAAAAGACTTGGTGGGAAATCTGGCAACCCAGAATGTGGGCTCTTTTTGAAGACCCCTATTCCTCAAAATATGCCCGGtactgCGCATTCGTCTCCCTTCTGTTCATCCTCATCTCCATCTCTACATTCTGCATGGAGACGCATGAGGCCTTCAACACCATCTACAACAAGACGGAGAACGTGACGGAGGGAAACGTGACTCGCGAGGTGATCGTCTACGAGGTGGTGACCGACAGCTGGCTTACGTACGTGGAGGGCATGTGCGTCGTCTGGTTCACCATTGAGGTGATGGCACGCGTGGTCTTCTGCCCGGACAAGGTCGAGTTCTTCAGGAGCACCCTCAACATCATCGACTTCATTGCCATTATGCCCTTCTACCTGGAGGTGGGGCTGAGCGGCCTGTCCTCCAAAGCCGCCAAGGACGTATTGGGGTTCCTGCGTGTGGTCCGCTTCGTCCGCATCCTGCGTATCTTCAAGCTGACCCGCCACTTCGTGGGACTTCGCGTCCTGGGCCACACGCTCCGCGCGAGCACCAATGAGTTCCTCCTGCTCATCATCTTCCTTGCTCTCGGAGTGCTCATCTTCGCAACCATGATCTACTATGCCGAGCGCATCGGCGCAGACCCCGACGACCCTACGGCTGCCAAACACACAAACTTCAAGAACATCCCCATTGGCTTCTGGTGGGCTGTGGTCACCATGACCACTCTGGGCTACGGGGACATGTATCCCGAGACGTGGTCGGGGATGCTGGTGGGCGCGCTGTGCGCCCTGGCGGGGGTGTTGACCATCGCCATGCCTGTGCCCGTCATCGTCAACAACTTTGGCATGTACTACTCACTGGCCATGGCTAAGCAGAAGCTGCCCAAGAAAAAGGGCAAGCACATCCCCCGGCCCACCATGCCAGGCTCGCCCAACTACTGCAAGCCCGACGCCATTGCCCTGGCCACTGCCTCGCCCCATAGGATCCTGGGTAATGTACTCGGCGAGGTGATCTGGTCCGGAGGCCTTGACTGCCCCCTCGCTCAAGAGGAGATCATAGAGATCAACCGAGAGTCCAAGCAGAACGGTGACGCGGCCACTGCGGTCCTGGCGAACGAGGACAGCCCCACCATTGACCAGGTGCTGAGTCCGGAGCGAGAGGGTGCCCGAACAACACGGGAACGCTACCAGCAGGACCGTGCTTGCTTCCTGCTCAACACCAGGGAATTCCGTGCCACAGATGGGAATGTGCGGAAAGTGTTAAGTTTCTAGCATCGTCCTTTTCTCTGAAGACATACTGAGTCGGTTAATCAGAAATTATCGGAGGGAGCCACTTTACCAAGACGTGTGACACAGATGGACAGTTAAAAGGAGGATCTTTGGTGTGACGAGCAATACCGGAGGGGAATCAAGATGAACATTAGGTTGGATCTTTATGCTGTTACCAAAGTAGCTTCTTGGCAACTCTGATCACTCTTTTGGTGACTGTCTGACAGATCACAATAACTGACTGAGCATTGCAGAGAAAAGGACTCCTACTGCAACATTCCAGAAGACGTTATATTGCGACGCTCAACCATCTCATACAGTAACAAATAACCGACTGCCGTGCTGATCTACTGAGTAACTTAGAGAATCCATGAATTATCACTCACCTATACACGAGGGAGCAGGTCTAACTGACTTTGTAGCACCTCTGCTAACACTGTAGCATTTGTTGGAAGGGAAATTATTGTCGTGACCTTATCCATCAACAGTTTGAACAGAGTGATGTGAAAATACGCACCGAATCTCAACTTTACATGCCTTTTTCCTCTTGTGTTACTTACCTTTACAAGAAACTATTGTACATGAAAGATGAAGACAGCTTCCACCTCCAAAAGTTTATTTGTAAAATGTGTAACAACAACTAAACCGGTTAAATGAACAGAGAACTGAATTTAGACATGTCTGTTCTCCCACCTCATGAGTTCATGACTTGTGGAGTTAAAGGCTTGAATGATAA

Function

NR:

description
potassium voltage-gated channel subfamily C member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955580.1 True 2533 mRNA 0.52 4 662693 712981
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498791 brsk1 coding upstream 18996 613176 ~ 643697 (+)
LOC110498790 LOC106578304 coding upstream 88155 535487 ~ 574538 (+)
LOC110498715 NA coding upstream 147564 497928 ~ 515129 (+)
LOC110498789 LOC106578306 coding upstream 162216 426261 ~ 500477 (+)
LOC118942481 zgc:158463 coding upstream 281377 374708 ~ 381316 (+)
LOC110498798 vatl coding downstream 358677 1071658 ~ 1094268 (+)
LOC118942081 NA coding downstream 1066462 1779443 ~ 1786132 (+)
LOC110498718 LOC106579196 coding downstream 1203386 1916367 ~ 2031184 (+)
LOC110498803 LOC100194623 coding downstream 1377360 2090341 ~ 2105851 (+)
LOC110498804 LOC106578327 coding downstream 1418078 2131059 ~ 2162975 (+)
G1650902 NA non-coding upstream 57897 604321 ~ 604796 (+)
G1650780 NA non-coding upstream 261029 399588 ~ 401664 (+)
G1650775 NA non-coding upstream 271328 391161 ~ 391365 (+)
G1650774 NA non-coding upstream 272074 386785 ~ 390619 (+)
G1650938 NA non-coding downstream 1211 714192 ~ 715754 (+)
G1650961 NA non-coding downstream 6470 719451 ~ 719719 (+)
G1650962 NA non-coding downstream 9726 722707 ~ 722945 (+)
G1650970 NA non-coding downstream 16749 729730 ~ 729940 (+)
G1650975 NA non-coding downstream 28548 741529 ~ 741765 (+)
G1652131 NA other downstream 935941 1648922 ~ 1649135 (+)
G1652237 NA other downstream 1030942 1743923 ~ 1744380 (+)
G1654400 NA other downstream 3184122 3897103 ~ 3897390 (+)
G1654426 NA other downstream 3236456 3949437 ~ 3955465 (+)
G1655848 NA other downstream 4514571 5227552 ~ 5229928 (+)

Expression

LOC110498792(LOC106578302) Expression in all Baseline Samples

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The chart has 1 Y axis displaying values. Range: 0 to 3.
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LOC110498792(LOC106578302) Expression in each Bioproject

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LOC110498792(LOC106578302) Expression in each Sample
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The chart has 1 Y axis displaying Expression. Range: 0 to 150.
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Co-expression Network