LOC110498798 (vatl)


Basic Information

Item Value
gene id LOC110498798
gene name vatl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 1071658 ~ 1094268 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575424.2
CGCCTCCCCTACATATAGTAGTTGATGGGGTTTGGCCAGTCAGGTGATATTTTCCGCTTCACCATTTTGTGCTGCTGCTCCGCGGTGTATTTAACAGAAGATTCGTGACTTGTCCAAATACATCTCTAGTTAGCTACATAGGTTTCCCAGTTTACATTTAAAGAGCGTGTGGCCGTCGATAGGTGTAGTCGGTAAGCCATTAAGGGGAACCGCAATATCCGTTTGGTATTCTTTTAAACCGAGAATGTCGTCCGAAAGCCCCGAATACTCTCCGTTCTTCGCAGTGATGGGAGCCTCTGCAGCTATGGTTTTCAGCGccttgGGAGCAGCCTATGGCACGGCTAAGAGTGGAACAGGAATTGCTGCCATGTCAGTGATGAGGCCAGAGCTCATCATGAAGTCCATCATTCCAGTGGTCATGGCGGGTATTATAGCCATCTACGGCCTGGTGGTAGCGGTGCTCATCGCCAACAACATCTCCGAGAAGGTCACCCTCTACAAGAGTTTCCTTCATCTTGGTGCTGGGCTGAGTGTGGGCTTGAGCGGGTTGGCAGCTGGCTTTGCAATTGGTATTGTAGGTGATGCGGGGGTTCGGGGCACGGCGCAGCAGCCCCGGCTCTTCGTGGGCATGATCCTCATCTTAATCTTTGCCGAGGTCCTCGGGCTCTACGGTCTCATCGTGGCCCTCATCCTGTCCACGAAATAAACCAACAACCTCTCCACCAATCTGTCTTATGTTGCTGAAGgaggaaaaaaataaatgaatgacaaaatacaaataaattattGTATAATAAAAAATGGCTCCATAAATATGGTCTTCTCTCTACAATGTGTACAGTTGTCCCAATTTGATAGTCATATGCAATGTAGTGATttgtctgtcctgtgtgttgCAAAATGTATGAAGATTCCCCCCCCACTGGTTTACAGCCTCCATGCTTGCCAGGTTTCTTGCTGATTTCTGCCTCTGGTCTTAGAGCTGACCAAAGGGCCCCCACTGGCTTACAGCCTCCTGCATTGATCTGGCTGTTTACATGATTTCTGCATTTAATGTCTGAGGATCTATTTGTAAAGGAACATATGTATGGACttaaagttgttttttttttgttttatttataaatgtttaAATGGGGCAAACATCTTTAATTCCCCATGAATTCTATAGATTTAATGCACTGTGGGTTAACTGTGATGTGGTTGGAGTTCCTCTGGATGTATTATTTGGGTTAAGATTGCCTTCAGTGTGTGGCTGGTGGAGTGGGCGTTGTGTAACTGTATTTTAATCGGGATGAAAACATTGCAGTGTTTCGAATGTGTTCATGTAGTACCGCTGTTTGATTGCATTAAAGGTTGTTGCCCAGTGTTGGGTCTCACAAGTGTAATTTTCAAAACATCTTCTCTCCAGCTTCTTCATCCCTGCTCGTCTGTTGATTGTTCACCACACATCGCTTCCAGTAAACATGCCTGGAGTTAGATTTTGGTTGAAAATTCCTTGTACTTACTGTAATTCAAATGGGTAGCCAGGTGATGTTTTGGTGTAGGAATGTTTCACAGGTAGTATGCTTAAGATATGGGTTATTTTCAAGGTGATGTTGGTAGAAAAAAAAGGGTACCATTTAGCTCAATTCATTGTTTTAGAAATcttacatttttattaaaaataaacttcATTTGAATT

Function

NR:

description
Vacuolar ATP synthase 16 kDa proteolipid subunit

GO:

id name namespace
GO:0033179 proton-transporting V-type ATPase, V0 domain cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG:

id description
K02155 ATPeV0C, ATP6L; V-type H+-transporting ATPase 16kDa proteolipid subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575424.2 True 1684 mRNA 0.44 3 1071658 1094268
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498792 LOC106578302 coding upstream 358677 662693 ~ 712981 (+)
LOC110498791 brsk1 coding upstream 427961 613176 ~ 643697 (+)
LOC110498790 LOC106578304 coding upstream 497120 535487 ~ 574538 (+)
LOC110498715 NA coding upstream 556529 497928 ~ 515129 (+)
LOC110498789 LOC106578306 coding upstream 571181 426261 ~ 500477 (+)
LOC118942081 NA coding downstream 685175 1779443 ~ 1786132 (+)
LOC110498718 LOC106579196 coding downstream 822099 1916367 ~ 2031184 (+)
LOC110498803 LOC100194623 coding downstream 996073 2090341 ~ 2105851 (+)
LOC110498804 LOC106578327 coding downstream 1036791 2131059 ~ 2162975 (+)
prodh2 prodh2 coding downstream 1072030 2166298 ~ 2199898 (+)
G1651514 NA non-coding upstream 33166 1038270 ~ 1038492 (+)
G1651513 NA non-coding upstream 35583 1035834 ~ 1036075 (+)
G1651512 NA non-coding upstream 36520 1034931 ~ 1035138 (+)
G1651511 NA non-coding upstream 37299 1034027 ~ 1034359 (+)
G1651504 NA non-coding upstream 39704 1022585 ~ 1031954 (+)
G1651563 tbc1d24 non-coding downstream 33264 1127532 ~ 1129040 (+)
G1651606 NA non-coding downstream 124873 1219141 ~ 1220898 (+)
G1651621 NA non-coding downstream 145429 1239697 ~ 1265093 (+)
G1651629 NA non-coding downstream 209108 1303376 ~ 1312338 (+)
G1651791 NA non-coding downstream 232716 1326984 ~ 1328732 (+)
G1652131 NA other downstream 554654 1648922 ~ 1649135 (+)
G1652237 NA other downstream 649655 1743923 ~ 1744380 (+)
G1654400 NA other downstream 2802835 3897103 ~ 3897390 (+)
G1654426 NA other downstream 2855169 3949437 ~ 3955465 (+)
G1655848 NA other downstream 4133284 5227552 ~ 5229928 (+)

Expression

LOC110498798(vatl) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 200.
End of interactive chart.

LOC110498798(vatl) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498798(vatl) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 6000.
End of interactive chart.

Co-expression Network