LOC110498815


Basic Information

Item Value
gene id LOC110498815
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 2574431 ~ 2577443 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469871.2
gtgggaAACACAGATATAGGATATCTTATTTGTTCTATTAGATCATCTTCATTATCTAACGTCACTTTTAGTTCACGTTGGAAGTTTTTTGGTAATAATAAAAACCAAATACATCTCATAAAGTTAATGTAAACTGACTGCTATCATCACAacatataagatctcctaagcctgtgttaaagaAGCATTATGTCGAGTTGTTGCATTATAATGTCATGATATATCTGCAGTAACCGTATAATTCTAGTGTTgtaacatatattatatatatgtatatataatgcTTTGGGCTCTTACATAACACTCCATACAGAACCAATCAGTCGATATAATGGACATCATAAATCACGCGATGTGAATCAGACAGTGGGGAGGTGCGACTCGTTGGTCAGAAGGTTCCAATCATCGTTTTATGTCATCATTTCCGAGCAGTCAAACAGCGTCAACCACAGCTGTTATTACACCCCGTTTACGTTGGCGGCGGTAAAGACCATTTTTATTGTGCAGTAACTAAAACTAGAAGATCTGGCGTCCTTTCCCTTCGCCAAAGCGTACATTTCCGGGGAGCCCGTGGCATGGTGTGACAGACGTGAGGGAGAGGCTGAAAGCGGTGGCTAGCGATCCGTCGCTGATAAACAACTTGACTCGCTTCGACACGGCTGTGCGGTGACTGGGTCAGGGATGTTAGGCGATGGAGAACAAAGTATGGAGCATGGTGGTACAAATAAAGGGGGAGAGAATGTGAGTAGGGGtttgaaggggagagagagttatgGAGGCAGAAAATGACGTTTGAAGAGAGCAACATAGTTTCCAGCGGCAGCTCGGGGGTCGAGAGTGCAGAGGAAGGGCAAGATGCGTCGCGGGGTGAGGAGGAGCATAAAGTGATTATGAACTTtaagggaggaagggggagttgGGGCGACGAGTCCGATAAGGTTGACGGCTGTGATAAAGTAGTTGATTGGGGAAATTGTCAACGCTAAAGTGTTACTGGATGGGAGCTTGTTGGTGTTCTGTAAGGACAATGCGCAGAGGGGAAAAGCTCTTGAGTGAAGCAAATAGGAAAGTGTAAGGTGGTGTCGAGCAGCTGGACTGATCAAGCAGGAAAACTGTGGATTAAAGGGGTGATAACAGGAGTGAATGTGAGTGTTGGCACTAAAGAGGTAAGAGACAACTTGAGATGAGTTATTCTAGTAAATGATCAAAGATTGCAAAAAAACAAGGGGTGGAGTTAGGGTAGATAGCCCGTTTATTCTGTTACACTTCAAGGACCGGGTACTGCCAAATATAGTAACCATAGGATACATGAGTGTATcctataaactgggtggtttgagccctgaattctgattggctgaaggccatagtatatcagaccgtatgccACTGGTCTGAcaaaacatttagttttactgctctgattacattggtaaccagtttataatagcaataaggctccttAGCCTgatgtgatttgtgtgtgtgaagGAAACATGGCTCGTCCCTAGACGAGCAAGGACTTGCTTATAGGATGCTGGACAGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGCCAGCTACTGAGGTGATACCTAAGAGTTCAGGGGGGAGGTGATATCTCAGGTGGATATGAGAGGGGATGTGGACAGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGGCAGATACTGAGGTGATACCTAAGAGTTCAGGGAGGAGGTGATATCTCGGGTGGATATGAGAGGGGATGTGGACCGTATG
>TU1892170
CTGTTATTACACCCCGTTTACGTTGGCGGCGGTAAAGACCATTTTTATTGTGCAGTAACTAAAACTAGAAGATCTGGCGTCCTTTCCCTTCGCCAAAGCGTACATTTCCGGGGAGCCCGTGGCATGGTGTGACAGACGTGAGGGAGAGGCTGAAAGCGGTGGCTAGCGATCCGTCGCTGATAAACAACTTGACTCGCTTCGACACGGCTGTGCGGTGACTGGGTCAGGGATGTTAGGCGATGGAGAACAAAGTATGGAGCATGGTGGTACAAATAAAGGGGGAGAGAATGTGAGTAGGGGtttgaaggggagagagagttatgGAGGCAGAAAATGACGTTTGAAGAGAGCAACATAGTTTCCAGCGGCAGCTCGGGGGTCGAGAGTGCAGAGGAAGGGCAAGATGCGTCGCGGGGTGAGGAGGAGCATAAAGTGATTATGAACTTtaagggaggaagggggagttgGGGCGACGAGTCCGATAAGGTTGACGGCTGTGATAAAGTAGTTGATTGGGGAAATTGTCAACGCTAAAGTGTTACTGGATGGGAGCTTGTTGGTGTTCTGTAAGGACAATGCGCAGAGGGGAAAAGCTCTTGAGTGAAGCAAATAGGAAAGTGTAAGGTGGTGTCGAGCAGCTGGACTGATCAAGCAGGAAAACTGTGGATTAAAGGGGTGATAACAGGAGTGAATGTGAGTGTTGGCACTAAAGAGGTAAGAGACAACTTGAGATGAGTTATTCTAGTAAATGATCAAAGATTGCAAAAAAACAAGGGGTGGAGTTAGGGTAGATAGCCCGTTTATTCTGTTACACTTCAAGGACCGGGTACTG
>TU1892173
TCCGATAAGGTTGACGGCTGTGATAAAGTAGTTGATTGGGGAAATTGTCAACGCTAAAGTGTTACTGGATGGGAGCTTGTTGGTGTTCTGTAAGGACAATGCGCAGAGGGGAAAAGCTCTTGAGTGAAGCAAATAGGAAAGTGTAAGGTGGTGTCGAGCAGCTGGACTGATCAAGCAGGAAAACTGTGGATTAAAGGGGTGATAACAGGAGTGAATGTGAGTGTTGGCACTAAAGAGGTAAGAGACAACTTGAGATGAGTTATTCTAGTAAATGATCAAAGATTGCAAAAAAACAAGGGGTGGAGTTAGGGTAGATAGCCCGTTTATTCTGTTACACTTCAAGGACCGGGTACTGCCAAATATAGTAACCATAGGATACATGAGTGTATcctataaactgggtggtttgagccctgaattctgattggctgaaggccatagtatatcagaccgtatgccACTGGTCTGAcaaaacatttagttttactgctctgattacattggtaaccagtttataatagcaataaggctccttAGCCTgatgtgatttgtgtgtgtgaagGAAACATGGCTCGTCCCTAGACGAGCAAGGACTTGCTTATAGGATGCTGGACAGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGCCAGCTACTGAGGTGATACCTAAGAGTTCAGGGGGGAGGTGATATCTCAGGTGGATATGAGAGGGGATGTGGACAGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGGCAGATACTGAGGTGATACCTAAGAGTTCAGGGAGGAGGTGATATCTCGGGTGGATATGAGAGGGGATGTGGACCGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGCCAGCTACTGAGGTGATACCTAAGAGTTCAGGGAGGAGGTGATATCTCGGGTGGATATGAGAGGGGATGTGGACAGTATGAATAACTGGGTGAGAACAGCGTTAGTGGGGGCAGATACTGAGGTGATACCTAAGAgttcagggaggaggaggaaagcagtCCCGTGGTGGACGGAGGATTGTGGGGCAGTTGTGAGGAATATAAACAAGACATTTAGAGTACTGAAAAGGACATATAACTTCCAacatctgattcagtatcagcaggccctggtgaggagaactctccctcagtctgattcagtatcagcagaccctggtgaggagaactatccctcagtctgattcagtatcagcaggccctggtgaggagaactctccctcagtctgattcagtatcagcaggccctggtgaggagaactatc

Function

NR:

description
uncharacterized protein LOC110498610

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469871.2 False 1769 mRNA 0.44 2 2574431 2576438
TU1892170 False 832 lncRNA 0.49 2 2574883 2575953
TU1892173 True 1295 lncRNA 0.47 2 2575599 2577443

Neighbor

gene id symbol gene type direction distance location
gall NA coding upstream 252754 2248096 ~ 2321677 (+)
prodh2 prodh2 coding upstream 374533 2166298 ~ 2199898 (+)
LOC110498804 LOC106578327 coding upstream 411456 2131059 ~ 2162975 (+)
LOC110498803 LOC100194623 coding upstream 468580 2090341 ~ 2105851 (+)
LOC110498718 LOC106579196 coding upstream 543247 1916367 ~ 2031184 (+)
LOC118942027 NA coding downstream 6323 2582761 ~ 2604403 (+)
LOC110498816 LOC106578342 coding downstream 40550 2616988 ~ 2628305 (+)
LOC110498818 LOC106578355 coding downstream 158520 2734958 ~ 2759417 (+)
LOC110498819 dnmbp coding downstream 206484 2782922 ~ 2907632 (+)
LOC110498820 NA coding downstream 237160 2813598 ~ 2815641 (+)
G1653048 NA non-coding upstream 43995 2528961 ~ 2530436 (+)
G1653046 NA non-coding upstream 62425 2511747 ~ 2512006 (+)
G1653034 NA non-coding upstream 88610 2485087 ~ 2485821 (+)
G1653026 NA non-coding upstream 96970 2477246 ~ 2477461 (+)
G1652621 NA non-coding upstream 101329 2427978 ~ 2473102 (+)
G1653068 NA non-coding downstream 2102 2578540 ~ 2579768 (+)
G1653073 NA non-coding downstream 29848 2606286 ~ 2606555 (+)
G1653074 NA non-coding downstream 30748 2607186 ~ 2607395 (+)
G1653075 NA non-coding downstream 31022 2607460 ~ 2607726 (+)
G1652237 NA other upstream 830051 1743923 ~ 1744380 (+)
G1652131 NA other upstream 925296 1648922 ~ 1649135 (+)
LOC110498791 brsk1 other upstream 1930807 613176 ~ 643697 (+)
G1654400 NA other downstream 1320665 3897103 ~ 3897390 (+)
G1654426 NA other downstream 1372999 3949437 ~ 3955465 (+)
G1655848 NA other downstream 2651114 5227552 ~ 5229928 (+)
G1656720 NA other downstream 3414036 5990474 ~ 5993750 (+)
wu:fj29h11 LOC106589505 other downstream 4439227 7015665 ~ 7074332 (+)

Expression

LOC110498815 Expression in all Baseline Samples

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LOC110498815 Expression in each Bioproject

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LOC110498815 Expression in each Sample
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Co-expression Network