LOC110498721


Basic Information

Item Value
gene id LOC110498721
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 2679544 ~ 2710896 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110498721
ATGACTATATCTGCACCAGGGAAGAGAGAGCGCCAGCGGTTTGTGGAAAAGAACGGCCGCTGAAACGTCCAGCATGACAACCTTGTTGGGGAGACAAGCTGATACATCTCCAACCTTTTCACCACGCTAGTCAACCTGACGTGGCGGTGGAACCTACACGGTAGCCTGGCTGGTTATAGATTCTATGTGGTGGATAATAGCCTATATTCGCAGTGACATCAAACCACACGCCCACAACTCATCCTACACCCCGTGCGTCGCCAACGTTTACAACTTTCCGTTCGCATACTTGTTCTTCATTGAAACGGAGGCTACTATCGGCTAAGGCTACCAGTACATCACAGAAAAGTGTTCGGAAGGCACTATCGTTTCTATATTGGACGCATTTCTTATCGGCTGCATGTTTGTCAAGATGTCCCAGCCGAAGAAACACGTGGAGATGCTCAAGTTTAGCCAGGACGCCGTTATCTCGCAACGGGACGGGAAGTTGTGCCTCATGTTCCGAGTGGGGAACCTGCGCAACAACCACATGGTGTCAGCCCAGATCAGGTGCCAACTCATCAAGttttga

Function

NR:

description
PREDICTED: G protein-activated inward rectifier potassium channel 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110498721 True 571 mRNA 0.50 3 2679544 2710896
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498813 maz coding downstream 105405 2558384 ~ 2574139 (-)
LOC118942026 NA coding downstream 132218 2546549 ~ 2547326 (-)
LOC118942013 NA coding downstream 160817 2517950 ~ 2518727 (-)
LOC110498814 prs8 coding downstream 177077 2478173 ~ 2502467 (-)
LOC110498812 LOC106578330 coding downstream 226809 2401287 ~ 2452735 (-)
LOC110498821 nrap coding upstream 220977 2931873 ~ 3043226 (-)
tdrd1 tdrd1 coding upstream 384998 3095894 ~ 3183859 (-)
dclre1a dclre1a coding upstream 667499 3378395 ~ 3414101 (-)
trnak-cuu-77 NA coding upstream 781600 3491868 ~ 3508267 (-)
trnak-cuu-78 NA coding upstream 783014 3493910 ~ 3493982 (-)
G1653198 NA non-coding downstream 13668 2665423 ~ 2665876 (-)
G1653193 NA non-coding downstream 16291 2663009 ~ 2663253 (-)
G1653180 NA non-coding downstream 24653 2654673 ~ 2654891 (-)
G1653178 NA non-coding downstream 27084 2652131 ~ 2652460 (-)
G1653159 LOC106578342 non-coding downstream 39400 2624760 ~ 2640144 (-)
G1653305 LOC106578343 non-coding upstream 35430 2746326 ~ 2748287 (-)
G1653308 NA non-coding upstream 40486 2751382 ~ 2751665 (-)
G1653311 NA non-coding upstream 47443 2758339 ~ 2759392 (-)
G1653312 NA non-coding upstream 49090 2759986 ~ 2761033 (-)
G1653322 NA non-coding upstream 56424 2767320 ~ 2767525 (-)
G1653208 NA other downstream 2112 2677001 ~ 2677432 (-)
G1652937 NA other downstream 363020 2316088 ~ 2316524 (-)
G1652691 NA other downstream 854866 1823675 ~ 1824678 (-)
G1652132 NA other downstream 1029397 1649202 ~ 1650147 (-)
tbc1d24 tbc1d24 other downstream 1546185 1111352 ~ 1133359 (-)
G1654002 NA other upstream 495888 3206784 ~ 3207079 (-)
G1654127 NA other upstream 660005 3370901 ~ 3371401 (-)
ablim1b ablim1 other upstream 917599 3628495 ~ 3705213 (-)
LOC110498829 LOC106578368 other upstream 1618450 4217971 ~ 4333041 (-)
G1655098 NA other upstream 1652820 4363716 ~ 4363983 (-)

Expression

LOC110498721 Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.6.
End of interactive chart.

LOC110498721 Expression in each Bioproject

Bar chart with 6 bars.
LOC110498721 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 5.
End of interactive chart.

Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_005251 kcnj19b coding NC_007123.7 CM002896.2 16062560 ~ 16084835 (-)
grasscarp (Ctenopharyngodon idella) CI01000063_00443887_00450411 NA coding CI01000063 null 443255 ~ 451442 (-)