LOC110498856 (LOC106578265)


Basic Information

Item Value
gene id LOC110498856
gene name LOC106578265
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 6261959 ~ 6305982 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575518.2
GGTATCGCCTGTAGATGGAGTGGAGACAGCCTACTTAACTCGAGAGGAGAGGCTTCCTGTCAACAGCCTCAGTCATACCGGAGGGCAGAGAAGAGGGGATGGCAGAAAACAGCGCCGATACTTGTGGTTCCGTTTATCGGAGCTGTTTGACTCATTCTCCCTGGGAAAAACCCCAGTCACCCAGTAACGGGGCTTCCAAATGGGTTCGCTTGAACGTGGGGGGAACCTATTTCTTAACAACACGACAGACGCTGTGCCGAGATCCGAAATCATTTCTGTACCGACTGAGCCAGGCTGACCCCGAACTCGACTCTGATAAGGATGACACTGGTGCATATCTTATAGACCGAGACCCCACATACTTTGGGCCGGTGCTGAACTACCTGAGGCATGGCAAGCTGGTGCTCAACAGGGACCTGGCTGAGGAAGGTGTCTTGGAGGAAGCCGAATTCTACAATATCACATCATTAATAAAGCTCCTCAAGGACAAGATCAGGGAACGTGACTGCAAAACATTACAGGCTCCAGTGAAGCATGTGTACCGGGTGCTGCAGTGCCAAGAGGAGGAGCTCACCCAGATGGTGTCCACAATGTCAGACGGCTGGAAGTTTGAGCAGCTGGTCAGCATTGGCTCCTCTTATAACTACGGAAACGAAGACCAATCTGAGTTCCTTTGTGTGGTCTCCAAGGAGCTGCACAACCAATCATACGGCACAAACAGTGAGCCCAGTGAGAAAGCCAAGATTCTTCAGGAGAGGGGATCCCGAATGTGACGGATCAGTATTACGAGCTCCAGGTATAACGATGCAAACATATCATTGACGAGGAAGAACCTTTCACTCAACAGAGAAGACATTAGTCGAGAGGGACttacatttgtttgtttttactccattttatattttattatgtAAATAAGTCTGTTTACATACTTTTTGTGCCTGTACAGTTAAACTGGATTTTTTTAAATTAGTGACAAGTTTTCCAACAAATGATGAATTATAATCATTTAAATATTTTATGCTATAAAACATGGTCATACACGGCCAATGATTCACTCAGGGGCTACTTTTGAGTTTCTTACACCTTCTAACTCAAGGGAATCTTGTAAGGGATCATGATGGTCTATCTATATTATCAAGCTTAAACCTGTACTGTCAGtagattaaaatatttttttgagaAATTCATTTAGGTTTCAAACACGTTTAATACTTCCTTAACTGGTTTATCCTTTGTATTTTTAGAGGGTACATTTAGTTTAATAAAGTCTATTTGGGGGTAAGATATTTTAGGGAAAGGTTGGGGTGTGCTAATATTTTTGGGGGACTAACGGTGAAGGAATATATTTTAATATCCTTAGGTTTTTTGATGTACATAATCTAAAAATTCCAATATTCATATTTAACTCGAACTGCACGTTTTGTACACTGTATAGTTAAACACAACTACAAATGTACGTTGTTGTACTGGATCTTACAAGCTAGAAAGTCTTGACAATTAAATTATGTTGACTCGAGTTTTGCAACGTTTGTACAGAGGTCTCTGCATATTAAGATTTGTAAATCAGGATTTCAATTGTTGATGCTCAATATCTGCTTTAGTTAGAACACACCTGGAACGTCTTTTTGATATCCAATAAGAGGAAATATACCTTGGCTCAGACGTTGACTGTTAAGTTGTACAAAGATGTATTTGTCTTGGAAATCTACACATTCTTTGAGGCATTTTGTATTGTGGAGACTTCATACACAGCATTTCAAGCTCTACAATAGGAGGAACACTGTGCACAATGCTTTCCTTATCCTGCAACACTGTTAAGGGGAAATACTGCATTTCaggactttttattttttttaaatatatatatacacacacacactgagttgtTTCTGGCCTGAGATGTGGCATTGTGCTGTCCGATATTTCATGAACTTCTAACTTTTGATAGTGTTGCCTTTTCCCATGCAGTGACGACCAAATACAATGTCTTATGTGCAGCTTACACATTAACTTTTAGTGTCGAGATaagaaaacaacaacatttctGGCTGCAGGCACACTGTGCAGCAGGACACAGACACAactcctctctcacacacacccgcacTCTCTTTTCACGTAATAATTCTATATAATTAAAGTTTATTGGATGGATGCATATTtttgttatatatacacacaaggGCTTATAAAGTGAACTTCTTTGCAGATTTCATAATTTCCAATCAAATAAGAGTGGGTGTTTTTGCCGGCGCTTGGCTATGTTTACATTTGCTATAGTATTCTGAAGCCTTCCAGATATCTTGCACACCCTCACATACCTTAACAGATCCTGACTTGTTTTGACTGGCACAAAGAAAACAAGCACTCCCCACTCCAGATACATTTTAAACACATGTTGATAGTTACTGTTAATTTATGTTTACATTTCAAAGTGCTAGTAATCTCTTGAGGACAGACTATGTAAACTTAAATGGTACTGCCCAAATTATGTGAGATTTTAATTTGAGACTTTTTTTTTGTGATGGTGATTATAAGTGGAATGGTGACACGTTCAGGCAGCTCGATGAGACTAGTTTTGGTCTAATGAGTTTTGTTGCAGTGAGATTCTTTTTTTTGGTTTAGTTTACTTGGTTCCATCTTAACCTTAGCAGTCTGTGTACTTTGGTCTGGCCTGTATAAACTGGCTGCACTACTTCCTCAGCAGCATCCTTCTCCTCACTGCTAGACTACATGCCATGGAGAAATAACCATTATATTTTGTGCACCAAAGTATCCAGTCAAGTTCCCAGTATATTATGAGTCAGCTGGTTATTTGATCACAGAATACTGCAATGCATGATTGAAGATGGTCACATTTAGGTCTATTATTCCTTAATCAGAATGATGACGCTGTTGATATCAAAGATTATCATGTCATCACTACATCAGTCACTTATGACTAATACCATGTTTTATGCAATGTTTAAAATAACTAATGTTACTGGGATAGATTTATGGTCTTGCTTAGGGTAAGTCCAATAAAATGGTTTGTCTTTCA
>XR_005037914.1
GGAGTGGTATCGCCTGTAGATGGAGTGGAGACAGCCTACTTAACTCGAGAGGAGAGGCTTCCTGTCAACAGCCTCAGTCATACCGGAGGGCAGAGAAGAGGGGATGGCAGAAAACAGCGCCGATACTTGTGGTTCCGTTTATCGGAGCTGTTTGACTCATTCTCCCTGGGAAAAACCCCAGTCACCCAGTAACGGGGCTTCCAAATGGGTTCGCTTGAACGTGGGGGGAACCTATTTCTTAACAACACGACAGACGCTGTGCCGAGATCCGAAATCATTTCTGTACCGACTGAGCCAGGCTGACCCCGAACTCGACTCTGATAAGGATGACACTGGTGCATATCTTATAGACCGAGACCCCACATACTTTGGGCCGGTGCTGAACTACCTGAGGCATGGCAAGCTGGTGCTCAACAGGGACCTGGCTGAGGAAGGTGTCTTGGAGGAAGCCGAATTCTACAATATCACATCATTAATAAAGCTCCTCAAGGACAAGATCAGGGAACGTGACTGCAAAACATTACAGGCTCCAGTGAAGCATGTGTACCGGGTGCTGCAGTGCCAAGAGGAGGAGCTCACCCAGATGGTGTCCACAATGTCAGACGGCTGGAAGTTTGAGCAGATCACCTGGCTGCACAGCAGTGAGTGACTCAAGGCTCTGGTCTCGTCGTGCTTGTAAACAAACTCCGTGTGATTGGGGACTACCtgtaagcttcataatgaaaaGTTGTGActggtgaaatgaagaacgcaatctTTATCTCCTTACGTATcacacaagttgactgcagCTGGTCAGCATTGGCTCCTCTTATAACTACGGAAACGAAGACCAATCTGAGTTCCTTTGTGTGGTCTCCAAGGAGCTGCACAACCAATCATACGGCACAAACAGTGAGCCCAGTGAGAAAGCCAAG
>XM_021575519.2
AGGAGTGGTATCGCCTGTAGATGGAGTGGAGACAGCCTACTTAACTCGAGAGGAGAGGCTTCCTGTCAACAGCCTCAGTCATACCGGAGGGCAGAGAAGAGGGGATGGCAGAAAACAGCGCCGATACTTGTGGTTCCGTTTATCGGAGCTGTTTGACTCATTCTCCCTGGGAAAAACCCCAGTCACCCAGTAACGGGGCTTCCAAATGGGTTCGCTTGAACGTGGGGGGAACCTATTTCTTAACAACACGACAGACGCTGTGCCGAGATCCGAAATCATTTCTGTACCGACTGAGCCAGGCTGACCCCGAACTCGACTCTGATAAGGATGACACTGGTGCATATCTTATAGACCGAGACCCCACATACTTTGGGCCGGTGCTGAACTACCTGAGGCATGGCAAGCTGGTGCTCAACAGGGACCTGGCTGAGGAAGGTGTCTTGGAGGAAGCCGAATTCTACAATATCACATCATTAATAAAGCTCCTCAAGGACAAGATCAGGGAACGTGACTGCAAAACATTACAGGCTCCAGTGAAGCATGTGTACCGGGTGCTGCAGTGCCAAGAGGAGGAGCTCACCCAGATGGTGTCCACAATGTCAGACGGCTGGAAGTTTGAGCAGCTTGTCAGTAtaggttatgggtgggcccagaaGTCAGTTTCTGCTGAATTGTGAAAGGGGAGGAGTCTACTTTCCCAAACCACAGTGGAAAGCTGGTCAGCATTGGCTCCTCTTATAACTACGGAAACGAAGACCAATCTGAGTTCCTTTGTGTGGTCTCCAAGGAGCTGCACAACCAATCATACGGCACAAACAGTGAGCCCAGTGAGAAAGCCAAG

Function

NR:

description
BTB/POZ domain-containing protein KCTD5-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575518.2 False 3043 mRNA 0.39 6 6261959 6305976
XR_005037914.1 False 917 mRNA 0.51 6 6269040 6305981
XM_021575519.2 True 841 mRNA 0.51 6 6269040 6305982

Neighbor

gene id symbol gene type direction distance location
LOC110498853 ube2i coding downstream 693 6236177 ~ 6261266 (-)
LOC110498852 LOC106586305 coding downstream 33909 6225124 ~ 6228050 (-)
LOC110498851 LOC106578267 coding downstream 49435 6192805 ~ 6212524 (-)
LOC110498850 NA coding downstream 74402 6173120 ~ 6187557 (-)
eps8l1b LOC106578277 coding downstream 303663 5944060 ~ 5958296 (-)
LOC110498855 LOC106578264 coding upstream 343 6306325 ~ 6316099 (-)
LOC110498857 LOC101479821 coding upstream 29543 6335525 ~ 6344649 (-)
LOC110498858 wdr24 coding upstream 57924 6363906 ~ 6374429 (-)
LOC110498859 LOC106578257 coding upstream 73690 6379672 ~ 6446042 (-)
LOC110498729 rhot2 coding upstream 156433 6462415 ~ 6482198 (-)
G1657678 NA non-coding downstream 31284 6230413 ~ 6230675 (-)
G1657752 NA non-coding downstream 40511 6221249 ~ 6221448 (-)
G1657751 NA non-coding downstream 40735 6220966 ~ 6221224 (-)
G1657748 NA non-coding downstream 44698 6217053 ~ 6217261 (-)
G1657767 NA non-coding upstream 53477 6359459 ~ 6360044 (-)
G1657811 NA non-coding upstream 60002 6365984 ~ 6366346 (-)
G1657768 NA non-coding upstream 71360 6377342 ~ 6379507 (-)
G1656633 LOC106578283 other downstream 400488 5857960 ~ 5861471 (-)
lyrm1 lyrm1 other downstream 407586 5844691 ~ 5854645 (-)
LOC110499577 LOC106578324 other downstream 1085141 5161588 ~ 5176857 (-)
G1655336 NA other downstream 1456379 4805192 ~ 4805580 (-)
G1657862 NA other upstream 193852 6499834 ~ 6500208 (-)
G1657868 LOC106589521 other upstream 199639 6505621 ~ 6507929 (-)
G1657869 LOC106589521 other upstream 203137 6509119 ~ 6509580 (-)

Expression


Co-expression Network