LOC110498863 (LOC106589519)


Basic Information

Item Value
gene id LOC110498863
gene name LOC106589519
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 6536771 ~ 6542492 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575534.2
CTGGTCCTGGAGTTGTGTCGCTCGAAGCCGATCACAGACCTCCAGACCATTCAGCCACACCTGGACAGGATACAGACCCTCACACCTCTCTGGGGGACACAGGTGAGCTCTTAAGACTGATGATGAAGATTTATCTGAATCTAACTTTCTGGGGCTGATTCAAACCCTGCTGAACGACCCAAATGAGATGGAACACTTCTTCCAGGATGTTTTTCCTGTGGAATTTGGTCCCAAGTATGATGCAGCAATCGAGAAACTCATGTGTCAGTTTCTTTCAAGACTTGAGAAGCTACTTCCGGTATCAAACTTTCAACAGGCTGCGTCCCTGCTCAGCGATGTCCCCTCTGTTCTGGAGGAATGTGTTCAGTCTGTGTCTCACCCTCAGCAGCTGAAAACCCTGCTTCAGTACCACAGAGACCTCAGCCAGCTGGACAACCATGATACTCTGTCTTCTTCCGATGGGGACTGCATTCtttcagctctctgtctccctccagtaGAAAGGGTGGTGATTGCAACTGAACAGACAGAGTCAGAAACACAGACATTATCCTTGAATGTCTTCATGGATACATTTACCAAAGAGTTGGAGGTGGACTCTGCAACACTGACAGAGTACACAGAGATGGAACCCGGGACAAGTATGGATGTAATAAAAAGTGAGAAGAGGGTGCAATGtgagaaaaacaacaaacaatctATAGAGTTTACGGACCCTGTGGAACATGAGGACATGGAGGTTCATGACGGTAATGAAGAAGAGAATGTTCTGGGGATTGGACCAGTACAAGATGAGACGGAAGGTATTGTTGAAGAAGTGAACCCCAGGTACAGAACAGTGATGGTTATCGGGGAAGATGGGGTGGCACAGCCTTATGAAGATTCAAGTGTCAGAAAGCCCAAAATAAAGACTCATAAAGACAGTGGAAGTCATGGAGAACAAATGAAAAGCATAGACGTATCTGATAAGATCATATCCTCAATGCTTCACAAGCCTTCAGTGGAGCTACAAAGAATTGATACTACTAACCTGATATTACCATCTAGACCAGTTAGACAAAACAGGGGGCGTAAGATGAAGACATTGCTAGCACGAGAACGGCAACAAACCAAAACAGAACTTTCAGAAGAAAATGCATTCAAAAAATGCCCAATTTGTGGGAAGACTTTCAGTCGAGGTGCTGACATGAAGCGGCACCAGAAAATCCACACAGGTGAGCGCCCATTTCAGTGTCTCCAGTGTAAGAAACGCTTCCTGTACCATTTTGATCTGAGGAGACATCGGCAAAATGTGTGTAAAGTCGTTGTGTCAGAACCTAAAGGTGAAACATCCAAGCAACTCAAAGGCAGGTCAAATATGTGTGATATGAGTTACAAGGACCCACAAAGCTTGGAGAAACCGAGACTAAAATGTGAAAAAGACTCCAAGAAAAAGCGTAGCAGATCTCCAGCTAGTGATGAGAAGGACACAATCCAGAAACCTGAGGGAGGAGACACGGAGCCGTCCAGTGGTGTTACTCTTGAGGCAACACCCGAGGACAGTGACTCATCCTCCACCAGTACTCCCCAGGACCCATCTTACGACCCATCTGGCGAACCTAGCAAGACCGAAAAACACAAACAGTCAAAAGTGTGCTGCATTTGCAAAAAACGTTTGCCAAAATCTTACAGCATGAAAGTTCACATGAGGTCCCACTCAGATCTGCGCCCTCACAAATGTCCTCATTGTGGGCAGACGTTCAAGAACATCTATGATATGAGGAAGCACATTGTAAAGACTGTGTGCAAGGTGCTGCGAGCTGATCCTGAAGAGGCCCAGGCCCAGGTACATGCACTCACCCACAGCCCCCTCCACTGCACTGAGTGCAGTAGGATGTTTGCAGACCCAGTAAAGCTAGATAGGCACAAGCTGTCGCACAAGCCTTTGAAATGCACCATGTGTGAAAACAGCTTCAATGGGGTCAAGCCCCTTAAGAAACACTATCTGGATGCCCATAAATTCAGCGGGCCATTCCTCTGCACCTCCTGTGATAAAAGCTACACTGATTTAGCAGCTCTCATCAGACACGAGAGGACTCACACCGGAGATCTCCCATACCAGTGCTCCCACTGTCCACGGAAGTTCAACTTATCAGCGGTTCTTGTCGAACACGAGAGAATACATACCGGAGAGAAACGATGCCTTTGCTGGGAGTGTGGAAAGGGATTTATCAGCAATGCAAAACTGAAAATGCACATGCTGTGTGTTCACAGAAAACCTGAAGATAAACACTTCTCCTGCTCCCAGTGTGACAAATCTTACGCATTACAAAGGACGTTACAAGTCCATGTGGCGAGACATCATGCTGGGGTGCGTTTCCCGTGCACATACTGCGGTAAGCTGTTTCTGAACATGTCCTCATTGACGAGGCATGACCTGATTCACACTCAGGAGAGGCCTTTTAAATGCACCGAATTGGAGTGCGGCAAAAGTTTCAAATCAAAATCTGAAGTGAAGGTACACATGAGATACCATACTGGGGAGCGGCCATTCAAGTGTAAAGTCTGTGGGAAGGGTTTTACTCAAAACTGTTATCTCACTCAACACATGCGAActcatacaggggagaagccatatCCTTGTTCTGTCTGTGGAAGAAAATTTGATGACTCTAGGAAACGGAAAAGGCACATGATgattcacactggagagaagccccACAAATGTTTGAAATGTGAGAAAGCTTTCAGTCGGGCAGACCTGTTGAAAGCACATGACAGGAAAGAACACTGAACAAGTTCAAGTCCAGGGATTGTTTTGTTtctttatatttttttcttcttctgtacAGATGTTAGTAATGAAACAGTTTGTCCCTCTATGTTGTGAACTTATTCTGGATCTTTTCTGAAATGTTGTTGTCTTAAAAATGAAGGATCTAAGAAACATGACCTGTCTGGGAATATGTATCCCTGAGATGCTTTTAGGGACAAGAGTTGGAAATAATGCAAGCTATTAACACTGATGCAATAGATTGGATAGTTGTTTAGTCAACGGCTTTTTATCTATCCTCATTCAAATAAAACCATGTGTATTTTGGTGCAGATCTGTACTCGCCGCTAGAGGGAGTTGGTCATCTTTCTCAAGCATCCATTTCACACTTCACTCTGAATAAAAGTAGATAGGGCCATGCTTTTGGAATGTACATTGTTTTTGTCAGTCAACATAAGTTGTGCTTTCTGAAATGTATGGTGAAATGTATATTTTCAGTTTTGTATGTCACAAAATTGGACAAAAAACATGAGGGCAGCATCTGTTTATGAACGGTGATGATCAGCAGCATCACAACACAGAGGTTGAGCTCAAAGTTCAAGATGTTCAGGGGTTTTCTAAGATAAGGCTCTAACATTTTCATACTGTCAGATAGATACTAGGCTAGTCTATGTATGCTATAGTGCATTCTAGAGTGGAAGGGGTTTTCTGCCAATCATACCCAATAATGTTTCAGTTTTAATAATGGTCCTTATGGCTGATTTTAGATGGGCAATTCTGATATTTTATTGACTAattgttcttttgaccaatcagatcagctctgaaaaatatctgatgtgattgattaaataataataatacaattagtGGAATAAAAgaccagaattgggctgcctgtctaaacgcagcctatgAGACCCCTGGGCCTGTTCTCATGCATAGGGCTTAGCTTTGTTGTTTCAagtacaaataaaatgtattgaatgaTTGTGAATACAAAATATTTTTGAAATAATG
>XM_021575533.2
CCGATATAAAGTAATTGTTATCAAAGTTGCAGAAATGCCGCGTGCGTTGCCTTATATCGGTGCATTCGTGACAACCTAACCATTACGAAACGTATATTCAACCAAATAAGCCTGACGTAGCAAATGAGCAGTTACATTTTCTGTTATCCACTTTGACCTCCATACAAAGTGCCTCACTTCCTGGCCTTTTTTTTCGTGGACTGATTTTGGGCGGCGTAaaccctctcgcttcgcctcttcctcgcTGGTGACGCCTTCTTATATGCAGTCATTGGGTGGCACAAATTGGCAAAAACGATTGGCATTTTCGTGTGTCTAGTGTGACTGCAGTGGAGAGACATGCAAAAACAAATGTCTGGGGGGAAAGgtccccctcttcctctcccctctctgcgccTCATGGTCCCGCCACTGCGGCTGGTCTCAGCAGCCATCTGGCAAACGATCCAGCAGAGATACGTGATGGATTATGGGATGCTGGAGGAGTTTGTTACCATGGTCACAGAGATGGTTCCAGAGCTTCTGAATATCCGACAGAGGGCCCAACTTATTCTGGGTCTTCGAGCACggCTGGTCCTGGAGTTGTGTCGCTCGAAGCCGATCACAGACCTCCAGACCATTCAGCCACACCTGGACAGGATACAGACCCTCACACCTCTCTGGGGGACACAGACTGATGATGAAGATTTATCTGAATCTAACTTTCTGGGGCTGATTCAAACCCTGCTGAACGACCCAAATGAGATGGAACACTTCTTCCAGGATGTTTTTCCTGTGGAATTTGGTCCCAAGTATGATGCAGCAATCGAGAAACTCATGTGTCAGTTTCTTTCAAGACTTGAGAAGCTACTTCCGGTATCAAACTTTCAACAGGCTGCGTCCCTGCTCAGCGATGTCCCCTCTGTTCTGGAGGAATGTGTTCAGTCTGTGTCTCACCCTCAGCAGCTGAAAACCCTGCTTCAGTACCACAGAGACCTCAGCCAGCTGGACAACCATGATACTCTGTCTTCTTCCGATGGGGACTGCATTCtttcagctctctgtctccctccagtaGAAAGGGTGGTGATTGCAACTGAACAGACAGAGTCAGAAACACAGACATTATCCTTGAATGTCTTCATGGATACATTTACCAAAGAGTTGGAGGTGGACTCTGCAACACTGACAGAGTACACAGAGATGGAACCCGGGACAAGTATGGATGTAATAAAAAGTGAGAAGAGGGTGCAATGtgagaaaaacaacaaacaatctATAGAGTTTACGGACCCTGTGGAACATGAGGACATGGAGGTTCATGACGGTAATGAAGAAGAGAATGTTCTGGGGATTGGACCAGTACAAGATGAGACGGAAGGTATTGTTGAAGAAGTGAACCCCAGGTACAGAACAGTGATGGTTATCGGGGAAGATGGGGTGGCACAGCCTTATGAAGATTCAAGTGTCAGAAAGCCCAAAATAAAGACTCATAAAGACAGTGGAAGTCATGGAGAACAAATGAAAAGCATAGACGTATCTGATAAGATCATATCCTCAATGCTTCACAAGCCTTCAGTGGAGCTACAAAGAATTGATACTACTAACCTGATATTACCATCTAGACCAGTTAGACAAAACAGGGGGCGTAAGATGAAGACATTGCTAGCACGAGAACGGCAACAAACCAAAACAGAACTTTCAGAAGAAAATGCATTCAAAAAATGCCCAATTTGTGGGAAGACTTTCAGTCGAGGTGCTGACATGAAGCGGCACCAGAAAATCCACACAGGTGAGCGCCCATTTCAGTGTCTCCAGTGTAAGAAACGCTTCCTGTACCATTTTGATCTGAGGAGACATCGGCAAAATGTGTGTAAAGTCGTTGTGTCAGAACCTAAAGGTGAAACATCCAAGCAACTCAAAGGCAGGTCAAATATGTGTGATATGAGTTACAAGGACCCACAAAGCTTGGAGAAACCGAGACTAAAATGTGAAAAAGACTCCAAGAAAAAGCGTAGCAGATCTCCAGCTAGTGATGAGAAGGACACAATCCAGAAACCTGAGGGAGGAGACACGGAGCCGTCCAGTGGTGTTACTCTTGAGGCAACACCCGAGGACAGTGACTCATCCTCCACCAGTACTCCCCAGGACCCATCTTACGACCCATCTGGCGAACCTAGCAAGACCGAAAAACACAAACAGTCAAAAGTGTGCTGCATTTGCAAAAAACGTTTGCCAAAATCTTACAGCATGAAAGTTCACATGAGGTCCCACTCAGATCTGCGCCCTCACAAATGTCCTCATTGTGGGCAGACGTTCAAGAACATCTATGATATGAGGAAGCACATTGTAAAGACTGTGTGCAAGGTGCTGCGAGCTGATCCTGAAGAGGCCCAGGCCCAGGTACATGCACTCACCCACAGCCCCCTCCACTGCACTGAGTGCAGTAGGATGTTTGCAGACCCAGTAAAGCTAGATAGGCACAAGCTGTCGCACAAGCCTTTGAAATGCACCATGTGTGAAAACAGCTTCAATGGGGTCAAGCCCCTTAAGAAACACTATCTGGATGCCCATAAATTCAGCGGGCCATTCCTCTGCACCTCCTGTGATAAAAGCTACACTGATTTAGCAGCTCTCATCAGACACGAGAGGACTCACACCGGAGATCTCCCATACCAGTGCTCCCACTGTCCACGGAAGTTCAACTTATCAGCGGTTCTTGTCGAACACGAGAGAATACATACCGGAGAGAAACGATGCCTTTGCTGGGAGTGTGGAAAGGGATTTATCAGCAATGCAAAACTGAAAATGCACATGCTGTGTGTTCACAGAAAACCTGAAGATAAACACTTCTCCTGCTCCCAGTGTGACAAATCTTACGCATTACAAAGGACGTTACAAGTCCATGTGGCGAGACATCATGCTGGGGTGCGTTTCCCGTGCACATACTGCGGTAAGCTGTTTCTGAACATGTCCTCATTGACGAGGCATGACCTGATTCACACTCAGGAGAGGCCTTTTAAATGCACCGAATTGGAGTGCGGCAAAAGTTTCAAATCAAAATCTGAAGTGAAGGTACACATGAGATACCATACTGGGGAGCGGCCATTCAAGTGTAAAGTCTGTGGGAAGGGTTTTACTCAAAACTGTTATCTCACTCAACACATGCGAActcatacaggggagaagccatatCCTTGTTCTGTCTGTGGAAGAAAATTTGATGACTCTAGGAAACGGAAAAGGCACATGATgattcacactggagagaagccccACAAATGTTTGAAATGTGAGAAAGCTTTCAGTCGGGCAGACCTGTTGAAAGCACATGACAGGAAAGAACACTGAACAAGTTCAAGTCCAGGGATTGTTTTGTTtctttatatttttttcttcttctgtacAGATGTTAGTAATGAAACAGTTTGTCCCTCTATGTTGTGAACTTATTCTGGATCTTTTCTGAAATGTTGTTGTCTTAAAAATGAAGGATCTAAGAAACATGACCTGTCTGGGAATATGTATCCCTGAGATGCTTTTAGGGACAAGAGTTGGAAATAATGCAAGCTATTAACACTGATGCAATAGATTGGATAGTTGTTTAGTCAACGGCTTTTTATCTATCCTCATTCAAATAAAACCATGTGTATTTTGGTGCAGATCTGTACTCGCCGCTAGAGGGAGTTGGTCATCTTTCTCAAGCATCCATTTCACACTTCACTCTGAATAAAAGTAGATAGGGCCATGCTTTTGGAATGTACATTGTTTTTGTCAGTCAACATAAGTTGTGCTTTCTGAAATGTATGGTGAAATGTATATTTTCAGTTTTGTATGTCACAAAATTGGACAAAAAACATGAGGGCAGCATCTGTTTATGAACGGTGATGATCAGCAGCATCACAACACAGAGGTTGAGCTCAAAGTTCAAGATGTTCAGGGGTTTTCTAAGATAAGGCTCTAACATTTTCATACTGTCAGATAGATACTAGGCTAGTCTATGTATGCTATAGTGCATTCTAGAGTGGAAGGGGTTTTCTGCCAATCATACCCAATAATGTTTCAGTTTTAATAATGGTCCTTATGGCTGATTTTAGATGGGCAATTCTGATATTTTATTGACTAattgttcttttgaccaatcagatcagctctgaaaaatatctgatgtgattgattaaataataataatacaattagtGGAATAAAAgaccagaattgggctgcctgtctaaacgcagcctatgAGACCCCTGGGCCTGTTCTCATGCATAGGGCTTAGCTTTGTTGTTTCAagtacaaataaaatgtattgaatgaTTGTGAATACAAAATATTTTTGAAATAATG

Function

NR:

description
zinc finger protein 160-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575534.2 False 3772 mRNA 0.44 5 6536771 6541074
XM_021575533.2 True 4329 mRNA 0.44 7 6536771 6542492

Neighbor

gene id symbol gene type direction distance location
LOC110498862 LOC106589520 coding downstream 1964 6524480 ~ 6534807 (-)
LOC110498729 rhot2 coding downstream 54573 6462415 ~ 6482198 (-)
LOC110498859 LOC106578257 coding downstream 90729 6379672 ~ 6446042 (-)
LOC110498858 wdr24 coding downstream 162342 6363906 ~ 6374429 (-)
LOC110498857 LOC101479821 coding downstream 192122 6335525 ~ 6344649 (-)
LOC110498864 LOC106589517 coding upstream 28842 6568700 ~ 6582912 (-)
LOC110498871 LOC106589511 coding upstream 283269 6825761 ~ 6829305 (-)
abcc3 LOC106589510 coding upstream 294187 6836679 ~ 6893619 (-)
LOC110498873 LOC106589507 coding upstream 416170 6958662 ~ 6998949 (-)
si:dkey-94l16.4 LOC106589503 coding upstream 555875 7079950 ~ 7110376 (-)
G1657870 NA non-coding downstream 18199 6517820 ~ 6518572 (-)
G1657868 LOC106589521 non-coding downstream 28842 6505621 ~ 6507929 (-)
G1657860 NA non-coding downstream 39974 6496484 ~ 6496797 (-)
G1657859 NA non-coding downstream 41146 6494918 ~ 6495625 (-)
G1657851 NA non-coding downstream 56700 6479620 ~ 6480071 (-)
G1657896 NA non-coding upstream 14318 6556810 ~ 6557066 (-)
G1657899 NA non-coding upstream 19781 6562273 ~ 6563359 (-)
G1657900 NA non-coding upstream 21261 6563753 ~ 6564942 (-)
G1657907 NA non-coding upstream 41415 6583907 ~ 6584411 (-)
G1657911 LOC106599233 non-coding upstream 45706 6588198 ~ 6588438 (-)
G1657869 LOC106589521 other downstream 27191 6509119 ~ 6509580 (-)
G1657862 NA other downstream 36563 6499834 ~ 6500208 (-)
G1657768 NA other downstream 157264 6377342 ~ 6379507 (-)
LOC110498913 h3f3b other upstream 1844476 8386968 ~ 8389308 (-)
G1661023 NA other upstream 2856625 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 2880291 9422783 ~ 9460115 (-)
G1662039 NA other upstream 3934471 10476963 ~ 10477185 (-)

Expression

LOC110498863(LOC106589519) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 25.
End of interactive chart.

LOC110498863(LOC106589519) Expression in each Bioproject

Bar chart with 21 bars.
LOC110498863(LOC106589519) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 75.
End of interactive chart.

Co-expression Network