bsk146 (LOC106589506)


Basic Information

Item Value
gene id bsk146
gene name LOC106589506
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 7075481 ~ 7093540 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955679.1
tcctctcatCCAGGAGCGATGCGGAGACAATAGGACTGGAGCTAGAGAAGCTTGCGAAAGTGCTAGCGGTCAGCTGAGCAATGCGAATTTACCGCTAGACCGGGTGTCAACAGCACGATAAGtgATACAAGCCGTTAGCCACCTCTCCAGTCCTGCCTGTGTGTCAGTCCCCTAAACCCGTCACCTGTTCCTGTCCGTCCCTTAACCCTATCCCCCAGTACACCCCCTGACCTGGTCCCCAGTATGAGTTCTTCTCCGCTGGGTTCCCGTGGCAACATGGACATTCTGGAGGAACTGCAGCTGATTGCAGCCCAGAACCTGGAGATGCTAGAGATTAACAAGTACTATGATGTCATCAGGGAGCTAGGCAAGGGCACCTACGGCAAGGTAGACCTGGTCATACACAAGATCAGAGGCACCAAGATGGCCCTGAAGTTCCTGAGGAAGAAGACGACCAAGCTGAAGTCGTTCCTGAGGGAGTACagcatctctctctacctctccccctgtcccttcaTCATTAACATGTTTGGGATCGCCTTCGAGACTGACGACTACTACGTGTTTGCCCAGGAGTATGCCCTGTCCGGGGATCTCTTCGACATCATCCCTCCACAGGTTGGTCTCCCGGAGACCGTCGCTAAGCGCTGTGTGCACCAGGTTGCCATCGCCCTGGACTACCTTCACTGTAAGAAGTTGGTGCACCGAGACATCAAGCCTGAGAACATCCTCATCTTCGACCGCGAGTGCCGCAAGGTCAAATTGTCCGACTTTGGCATGACACGCCGCGCTGGCTCGCCGGTCAAACGTgTGAGCGGTACCATCCCGTACACGGCTCCGGAGCTGTGCGACACGTCTCGCCACGAGGGCTTCTGCGTGGACTACAGCACGGATGTGTGGGCCTTTGGCGTCCTCCTCTTCTGCATGCTGACCGGTAACTTCCCCTGGGAGAAGGCCCTGCCCTCCGACTCCTTCTATCAGGAGTTCACACGCTGGCAGAGGCGCCGCACGGGCACCGTACCCTCGCAGTGGCGCCGCTTCACAGAGCAGGCCCTCCGCATGTTCCGCAGGCTCCTCTCTGTGGAGCAGGACCGACGCTGCTCCGTCAAAGAGGTGTTTGGCTACTTCAGCCACAGCTGGATGCTGGATGGAGACAGCAACGGGAacggaggagggggtggagagagagagagggagagaggaggggtgagggtggagggggaagggaggagtaCGTCGTCCTCGTCTGGGGAGGACGATGAAGACATGCTGGTGGAGAGGATGAAACAGCagactctgtctcctctctctcctctgtctcctgtgtCTGTGGAGAGGGGGACTGGGGGTACAAAGGCAGGGATGATGGAATCAGGTGGAGGACACCATTTTGTGTCTGTTTCCACCACCAGCTCCGTATCCTCTACTAACAGCTATGAACGCATGCCCAGAGACAGCATCAGCAACAACAACCAGCCTGCAGGGCGCATGCTGGTGGCTACACCTATAGAGATCTGTGTCTGAGAGATGTATGTGCGAGACGGGCCTGAGAAGGACTGAAATACTgcgtacagtacacacacacgtacagacacctacactcatatacacacacatatccatacatacatacattcagaaagtattcagacccctttactttttccacatgttgttacatt
>XM_021575548.2
atCCAGGAGCGATGCGGAGACAATAGGACTGGAGCTAGAGAAGCTTGCGAAAGTGCTAGCGGTCAGCTGAGCAATGCGAATTTACCGCTAGACCGGGTGTCAACAGCACGATAAGGTACATTTGAATGCAGACGGGGAAGATAAATTGTTATATTAGCCAAGCAGTTTATGTGCTATCATCCTCACGATTTGTTATTTATCTGGCGTGACTGGGCAGACTTCAGAGCCCTCGTATATTGAATGtgATACAAGCCGTTAGCCACCTCTCCAGTCCTGCCTGTGTGTCAGTCCCCTAAACCCGTCACCTGTTCCTGTCCGTCCCTTAACCCTATCCCCCAGTACACCCCCTGACCTGGTCCCCAGTATGAGTTCTTCTCCGCTGGGTTCCCGTGGCAACATGGACATTCTGGAGGAACTGCAGCTGATTGCAGCCCAGAACCTGGAGATGCTAGAGATTAACAAGTACTATGATGTCATCAGGGAGCTAGGCAAGGGCACCTACGGCAAGGTAGACCTGGTCATACACAAGATCAGAGGCACCAAGATGGCCCTGAAGTTCCTGAGGAAGAAGACGACCAAGCTGAAGTCGTTCCTGAGGGAGTACagcatctctctctacctctccccctgtcccttcaTCATTAACATGTTTGGGATCGCCTTCGAGACTGACGACTACTACGTGTTTGCCCAGGAGTATGCCCTGTCCGGGGATCTCTTCGACATCATCCCTCCACAGGTTGGTCTCCCGGAGACCGTCGCTAAGCGCTGTGTGCACCAGGTTGCCATCGCCCTGGACTACCTTCACTGTAAGAAGTTGGTGCACCGAGACATCAAGCCTGAGAACATCCTCATCTTCGACCGCGAGTGCCGCAAGGTCAAATTGTCCGACTTTGGCATGACACGCCGCGCTGGCTCGCCGGTCAAACGTgTGAGCGGTACCATCCCGTACACGGCTCCGGAGCTGTGCGACACGTCTCGCCACGAGGGCTTCTGCGTGGACTACAGCACGGATGTGTGGGCCTTTGGCGTCCTCCTCTTCTGCATGCTGACCGGTAACTTCCCCTGGGAGAAGGCCCTGCCCTCCGACTCCTTCTATCAGGAGTTCACACGCTGGCAGAGGCGCCGCACGGGCACCGTACCCTCGCAGTGGCGCCGCTTCACAGAGCAGGCCCTCCGCATGTTCCGCAGGCTCCTCTCTGTGGAGCAGGACCGACGCTGCTCCGTCAAAGAGGTGTTTGGCTACTTCAGCCACAGCTGGATGCTGGATGGAGACAGCAACGGGAacggaggagggggtggagagagagagagggagagaggaggggtgagggtggagggggaagggaggagtaCGTCGTCCTCGTCTGGGGAGGACGATGAAGACATGCTGGTGGAGAGGATGAAACAGCagactctgtctcctctctctcctctgtctcctgtgtCTGTGGAGAGGGGGACTGGGGGTACAAAGGCAGGGATGATGGAATCAGGTGGAGGACACCATTTTGTGTCTGTTTCCACCACCAGCTCCGTATCCTCTACTAACAGCTATGAACGCATGCCCAGAGACAGCATCAGCAACAACAACCAGCCTGCAGGGCGCATGCTGGTGGCTACACCTATAGAGATCTGTGTCTGAGAGATGTATGTGCGAGACGGGCCTGAGAAGGACTGAAATACTgcgtacagtacacacacacgtacagacacctacactcatatacacacacatatccatacatacatacattcagaaagtattcagacccctttactttttccacatgttgttacatt
>XM_036955678.1
atCCAGGAGCGATGCGGAGACAATAGGACTGGAGCTAGAGAAGCTTGCGAAAGTGCTAGCGGTCAGCTGAGCAATGCGAATTTACCGCTAGACCGGGTGTCAACAGCACGATAAGGTACATTTGAATGCAGACGGGGAAGATAAATTGTTATATTAGCCAAGCAGTTTATGTGCTATCATCCTCACGATTTGTTATTTATCTGGCGTGACTGGGCAGACTTCAGAGCCCTCGTATATTGAATGCTGTGTGTTGCTGAAAAGCTGCCAGCCTCGTAAGGCAAGGAAAGGATCAGtgATACAAGCCGTTAGCCACCTCTCCAGTCCTGCCTGTGTGTCAGTCCCCTAAACCCGTCACCTGTTCCTGTCCGTCCCTTAACCCTATCCCCCAGTACACCCCCTGACCTGGTCCCCAGTATGAGTTCTTCTCCGCTGGGTTCCCGTGGCAACATGGACATTCTGGAGGAACTGCAGCTGATTGCAGCCCAGAACCTGGAGATGCTAGAGATTAACAAGTACTATGATGTCATCAGGGAGCTAGGCAAGGGCACCTACGGCAAGGTAGACCTGGTCATACACAAGATCAGAGGCACCAAGATGGCCCTGAAGTTCCTGAGGAAGAAGACGACCAAGCTGAAGTCGTTCCTGAGGGAGTACagcatctctctctacctctccccctgtcccttcaTCATTAACATGTTTGGGATCGCCTTCGAGACTGACGACTACTACGTGTTTGCCCAGGAGTATGCCCTGTCCGGGGATCTCTTCGACATCATCCCTCCACAGGTTGGTCTCCCGGAGACCGTCGCTAAGCGCTGTGTGCACCAGGTTGCCATCGCCCTGGACTACCTTCACTGTAAGAAGTTGGTGCACCGAGACATCAAGCCTGAGAACATCCTCATCTTCGACCGCGAGTGCCGCAAGGTCAAATTGTCCGACTTTGGCATGACACGCCGCGCTGGCTCGCCGGTCAAACGTgTGAGCGGTACCATCCCGTACACGGCTCCGGAGCTGTGCGACACGTCTCGCCACGAGGGCTTCTGCGTGGACTACAGCACGGATGTGTGGGCCTTTGGCGTCCTCCTCTTCTGCATGCTGACCGGTAACTTCCCCTGGGAGAAGGCCCTGCCCTCCGACTCCTTCTATCAGGAGTTCACACGCTGGCAGAGGCGCCGCACGGGCACCGTACCCTCGCAGTGGCGCCGCTTCACAGAGCAGGCCCTCCGCATGTTCCGCAGGCTCCTCTCTGTGGAGCAGGACCGACGCTGCTCCGTCAAAGAGGTGTTTGGCTACTTCAGCCACAGCTGGATGCTGGATGGAGACAGCAACGGGAacggaggagggggtggagagagagagagggagagaggaggggtgagggtggagggggaagggaggagtaCGTCGTCCTCGTCTGGGGAGGACGATGAAGACATGCTGGTGGAGAGGATGAAACAGCagactctgtctcctctctctcctctgtctcctgtgtCTGTGGAGAGGGGGACTGGGGGTACAAAGGCAGGGATGATGGAATCAGGTGGAGGACACCATTTTGTGTCTGTTTCCACCACCAGCTCCGTATCCTCTACTAACAGCTATGAACGCATGCCCAGAGACAGCATCAGCAACAACAACCAGCCTGCAGGGCGCATGCTGGTGGCTACACCTATAGAGATCTGTGTCTGAGAGATGTATGTGCGAGACGGGCCTGAGAAGGACTGAAATACTgcgtacagtacacacacacgtacagacacctacactcatatacacacacatatccatacatacatacattcagaaagtattcagacccctttactttttccacatgttgttacatt

Function

NR:

description
serine/threonine-protein kinase SBK1-like

GO: NA

KEGG:

id description
K08858 SBK; serine/threonine-protein kinase SBK

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955679.1 False 1682 mRNA 0.56 5 7075481 7093540
XM_021575548.2 False 1803 mRNA 0.55 5 7075488 7093540
XM_036955678.1 True 1853 mRNA 0.55 6 7075488 7093540

Neighbor

gene id symbol gene type direction distance location
wu:fj29h11 LOC106589505 coding upstream 1149 7015665 ~ 7074332 (+)
LOC110498876 st2b1 coding upstream 60047 7009744 ~ 7015434 (+)
LOC110498870 LOC106589512 coding upstream 293866 6777999 ~ 6781615 (+)
spag9b LOC106589513 coding upstream 367394 6657142 ~ 6709243 (+)
daglb LOC100286527 coding upstream 420269 6637448 ~ 6655212 (+)
dhrs7cb dhrs7c coding downstream 97267 7190807 ~ 7194759 (+)
LOC110498883 LOC106589500 coding downstream 108336 7201876 ~ 7212181 (+)
hs3st3l LOC106589499 coding downstream 148841 7242381 ~ 7255769 (+)
LOC110498885 glp2r coding downstream 395828 7489368 ~ 7506485 (+)
pts pts coding downstream 431982 7525522 ~ 7528685 (+)
G1657368 LOC105030512 non-coding upstream 71925 7003229 ~ 7003556 (+)
G1657366 NA non-coding upstream 73507 7001689 ~ 7001974 (+)
G1657363 NA non-coding upstream 76640 6998363 ~ 6998841 (+)
G1657361 NA non-coding upstream 79416 6995622 ~ 6996065 (+)
G1657353 LOC106589507 non-coding upstream 91763 6982659 ~ 6983718 (+)
G1657389 LOC106589502 non-coding downstream 21371 7114911 ~ 7116042 (+)
G1657423 NA non-coding downstream 163597 7257137 ~ 7261264 (+)
G1657479 LOC106589498 non-coding downstream 172719 7266259 ~ 7267044 (+)
G1657582 NA non-coding downstream 308545 7402085 ~ 7402359 (+)
G1657605 NA non-coding downstream 337501 7431041 ~ 7431260 (+)
G1656720 NA other upstream 1081731 5990474 ~ 5993750 (+)
G1655848 NA other upstream 1845553 5227552 ~ 5229928 (+)
G1654426 NA other upstream 3120016 3949437 ~ 3955465 (+)
G1654400 NA other upstream 3178091 3897103 ~ 3897390 (+)
G1658572 NA other downstream 610966 7704506 ~ 7705151 (+)
unk LOC106589472 other downstream 1300131 8392044 ~ 8401533 (+)
LOC110498922 cssa28h17orf62 other downstream 1430752 8524125 ~ 8527761 (+)
G1661477 NA other downstream 2958082 10051622 ~ 10052089 (+)
G1662037 NA other downstream 3382627 10476167 ~ 10476689 (+)

Expression


Co-expression Network