LOC110498883 (LOC106589500)


Basic Information

Item Value
gene id LOC110498883
gene name LOC106589500
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 7201876 ~ 7212181 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575561.2
ttctttttttaacgtATATTTTATTCTTCACTTCTCCCTAATATGTTGTTAAGGTTGATCCGTTTTCACCCCATCCAGTAGCTGGCGGCTTGCACCTCTAACGTTGTTGCGGACCGCCATAATTccatagaagaagaaaaaaaaaaaatccgtgACCCGGAAGTAGTAAAATATTATTGCTGGCTTGGCTTCAGAGCGGCGCTAACAACCATGTCGAGCAACGAGGTTTTTCAGACACAATTATGTACTATTATGGATATATTCGTTGAATCGGCAGTAAGGGAGGTGTCGAGACTCTTAGACGAGTGCTTTGTTGCTGTTATGGAAAATGAAGAGAATAGTTTGCTAAAGAGAGAAATGACACGCGTGAATAAAACCAACACGAGAAAGTTTGCATCATTCATGGAGGTGTTGAGTAAAACCTCGATAGAGAAAATAGCACTGCTAACGTACGTGGTCGAATCGGAAGTGAGAGTGGTGGAGAAAACCGCTCTAAACAGGCCTCTCCGTCTGGCAGGAGGGAGGACGGAAGAAAAACCACAAAGGGGTGAGGGATCTGTCTCTGAGTCTAATCATCATGATGATCAACCTGACTTTGTCCCCCTGTCCTCACCTGCATCAGATGAGGATTTGCTCCCTCAGTTTCATCCACAAGACGAGTTTGATCTTGAACCCCAGAGCCTGTTTGCAACAGACCAAGACAAACGAGACAGACAGCCCTTCAGCTGTTCTCATTGTGGAAAAGATTTCAAGATGAGATGTTTATTGAATAAACACTTTCGGACCCATTCAAAACCCTATAGCTGCTTGCAGTGTGGGAGATGTTTTAGCTTGAAGAGGCGGCTTGAGGAACACTCCATGACACATTCTGGAGAGACACCCTTCAGTTGTGCCGATTGCGACGCAGTGTTTCGCCAGAAACCTGCTTTGCAGTCACACATGAAGCGACACAAAACAAAGAAAACGGTCACATGCACAGTTTGTGAAAAAAAGTTTCTAGGGGAAACGGGACTAGAGAGGCACAAGTGTAGTGGTGATGCACCGAAGACATTCAGCTGCTCTCTTTGCCCAAAGACCTTCAAGTGGAGACGCAGACTGGTCGATCACGAGGCTACGCATTCAGGGGAGAGAAAGTATTGCTGTGAAACCTGCGGCAAACTTTTCTTTACCACTTCAACCTTAGCCGTCCATAAGAGGAGTCATATAGAAAAGGATCatagctgtactgtatgtggCCAACGTTTCAGCGATGCACCTGCTCTCAGAAAGCATATGGGGGTCATCCATCCTGGAGAAACTAAAGAAAAATATTTTGTTTGCGACGTGTGTGGCAAATGTTTTGGCCGAAAGTGCCATCTGAAAAGCCATATGACTCTACATGGGGCAGAGAAACCTTTTTCTTGTGATGTTTGTGGAAAAAAGTTTAGTCAAGGTGCTAATCTCAGCAGACACAAGAGAACTCATACAGGCCAGAAATTGTATTGCTGTGACGTTTGTGGTAAAAGGTTCACCCAGTCCGGAACCCTGAAGATCCATAAAATAAGGCACACTGGTGAAAGGCCTTACAAGTGTGATGTCTGTGAGAAAGCCTTCTTTGAGCCTTCCTCCCTCCGGAGTCACAAGAGACGTCACCTTACACTTCAGGAAAAGCTGCAGTCTGGCCCAAAGCTGCACTCTGGGACAATTCAGCCGTCTGGCCCAAAGCCATATGTCTGCAATCACTGTGGTAAATCCTTCTATGTGAAAGTTTCTCTGGATCAGCATGTGcgcattcacacaggagagaaaccgttcAAGTGTGACATTTGTGGGGAAGGTTTTAGGTATCATCATTCACTTAAAATTCACAAGGTCACTCACACAGGGTTGAAACCATATTACTGTAAAGTTTGCGGGAAAGGGTTTATGTACAATTTCCTTAAAGTTCACATGCGCACTCACACAGGCGAGAAACCATTTGAGTGTGATCAATGTGGTAAGAGGTTCAGCCAGAAAGGTCATCTAAAATCTCACGAGCGTGTGCACACTGGTGTCAAAGCATTTGTGTGCAAAGACTGTGGGAATGCCTATGCCTGTAGACACAATCTAAAAGTCCACAAGTGCAAGTACAACTGGAAACCAGCTCCTGGAAACAGTGCAGAGGATTACTGAAGAAACAGGTCTAAGATTAATGGCACAGGGCCTCTGAATAATATGGCAGTGTGAAAATGTTGGTGCTCAAGAACTTACTAAACTAAATCAAACGGCCTCAGTTTTTATGTTGAAAATGTGACCTGCGTGACATTCCACCTTAGGAAAAATCAAATATTTTACAATTGTAGTTAGCTTTGGGCTCTTAAGTACATTTTAATAAACCTCTATAGTCAAACTTCTC

Function

NR:

description
gastrula zinc finger protein XlCGF57.1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575561.2 True 2374 mRNA 0.44 3 7201876 7212181

Neighbor

gene id symbol gene type direction distance location
dhrs7cb dhrs7c coding upstream 7117 7190807 ~ 7194759 (+)
bsk146 LOC106589506 coding upstream 108336 7075481 ~ 7093540 (+)
wu:fj29h11 LOC106589505 coding upstream 127544 7015665 ~ 7074332 (+)
LOC110498876 st2b1 coding upstream 186442 7009744 ~ 7015434 (+)
LOC110498870 LOC106589512 coding upstream 420261 6777999 ~ 6781615 (+)
hs3st3l LOC106589499 coding downstream 30200 7242381 ~ 7255769 (+)
LOC110498885 glp2r coding downstream 277187 7489368 ~ 7506485 (+)
pts pts coding downstream 313341 7525522 ~ 7528685 (+)
LOC110498886 LOC106589493 coding downstream 322851 7535032 ~ 7579012 (+)
adprm adprm coding downstream 462168 7674349 ~ 7677005 (+)
G1657389 LOC106589502 non-coding upstream 85834 7114911 ~ 7116042 (+)
G1657368 LOC105030512 non-coding upstream 198320 7003229 ~ 7003556 (+)
G1657366 NA non-coding upstream 199902 7001689 ~ 7001974 (+)
G1657363 NA non-coding upstream 203035 6998363 ~ 6998841 (+)
G1657361 NA non-coding upstream 205811 6995622 ~ 6996065 (+)
G1657423 NA non-coding downstream 44956 7257137 ~ 7261264 (+)
G1657479 LOC106589498 non-coding downstream 54078 7266259 ~ 7267044 (+)
G1657582 NA non-coding downstream 189904 7402085 ~ 7402359 (+)
G1657605 NA non-coding downstream 218860 7431041 ~ 7431260 (+)
G1657606 NA non-coding downstream 219364 7431545 ~ 7431783 (+)
G1656720 NA other upstream 1208126 5990474 ~ 5993750 (+)
G1655848 NA other upstream 1971948 5227552 ~ 5229928 (+)
G1654426 NA other upstream 3246411 3949437 ~ 3955465 (+)
G1654400 NA other upstream 3304486 3897103 ~ 3897390 (+)
G1658572 NA other downstream 492325 7704506 ~ 7705151 (+)
unk LOC106589472 other downstream 1181490 8392044 ~ 8401533 (+)
LOC110498922 cssa28h17orf62 other downstream 1312111 8524125 ~ 8527761 (+)
G1661477 NA other downstream 2839441 10051622 ~ 10052089 (+)
G1662037 NA other downstream 3263986 10476167 ~ 10476689 (+)

Expression


Co-expression Network