LOC110498895 (LOC106589487)


Basic Information

Item Value
gene id LOC110498895
gene name LOC106589487
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 7877419 ~ 7879861 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575583.2
TATGTGGATAAGAAACGGTTTGAATAGGCTGAACTCTCAGTAAATGATGTGAAACGGTTGAAAGACTCTTGAAAGACAGCTGTACTTGTAAGGAGCTCAGTTCATTTGTACCTCGTAGCGGTCTATCTATCCACGATGAAGCTCATCCTGACAATCTCCTGCGCCTTCACGCTGTTCTACACAGCTGACATGCTCGATTGCTACACCTGTGAGCCTGAGGATGAAAAATGTCGGACAACAGTATTAAAGAACTGTGTGAAGGCAGTATGTTCCACCTTAACACGCATAGAATATCCTTCAGATTCCATCAGAGTATCTAAGGGTTGTACGTATGTAGCCGAAAACTGTTACTTCATGGATAAAGTAACAGAACTGTCAATGAACAACGGATACTCACAAGCCTCCCAATCCTCGTTTTGCTGCAACACGACAGGCTGCAACATAGACACCCTCCCTGCCCTCAGTGACAAGCCCAATAAACTACAATGTCACACCTGGGTGAATGGTACTTATGAAGTTTTGCAATGCGTTGGAATTGAAGACCACTGCTTCAAATATAAACAGCTCACTCCTGATGGGGGCAAAGTCACCATTTATGGAGGCTGTGCCTCCAGTGACTCATGCCTCTGGTCTGAGATGCCTAACCAGACGAACCTCAACTGCTGCAAGGGGAGTCTGTGTAACAAAGCCATGGGGATGAGTCTGAGTTCTCTCCCTCTTCTGCTGGGTCTCCTCCTCATCTCACTGGTCTAGTTAGTGGGAGGATTCATGGTAATCCCAACCGTTGGTGTGATATCCACAATAAATCAATGTGTCAATATATTGGTACATCTAAGAAATTTGAAACATAAGTAATATTATTGTGTTTGGATGTTAATTTATTCGCAAAAGAAATGGAAATTGTAGAATTGTTTTAAAGTCTGTAGTCACTCATGTCACTCTTTACTTGTACGTTaggttactgtatattataaactgggtggtacgagtcctgaatgctgattggctgacagctgtggtatgtcagaccgtataccacgtgtgtgacaaaacatgtatttttactgctctaattactttggtaaccCGATTATATTATGCCTTTATattattaagcaataaggcccaagggctttgtggtatatggccaatataccacggataaggcctgtatccaggcactctgtgttgcatcgtgcttaagaacagccatTAGCCAatttatattggccatatactacaccCCCTTGGGCCTTTTTGCTTAATTATATAATGGCATAATATCACCACAAAACTATGTTACATATGGTACAGTGCAAAGATCAAggttgctccctctctctcatcaatTTCAATTGTACTCTCTTCCTAAACAAAGGTCTTACACACATCTGAAAGCAGGAAAGGAAAAGGAAATAGAGAGAAGGACCACCAAACATCTGATGCTAAACCAAAGAATGTTAACGAGgccataaatatatttttatacctTTCTACTATGTTTGATATGATGCCATTATCGGGTGAACGTAGCAGGGTAAAGTCAGGTCTGATGGGGCAGAGTAAACAGATTTAGGAGATGGGTTTATTCTCAGGTATAGGATCATACCCCTATATTTTCACTTCTTAGTTTTTTTCTGTACTGCTTTTTAGTTGAGGCTTGTAGCTAGCTGAGGGTTGTAACATGGCAGTGTGTACCCATTTATATCAACAGTTATTATCAATCAGTTATTATATGCTTAATGTGCTTTGGGACTaataaaataaaagtaaataATCCTA

Function

NR:

description
urokinase plasminogen activator surface receptor-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575583.2 True 1782 mRNA 0.41 5 7877419 7879861
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110498894 LOC106589486 coding upstream 3186 7871801 ~ 7874233 (+)
map2k4b LOC106589490 coding upstream 181140 7611621 ~ 7696279 (+)
adprm adprm coding upstream 200414 7674349 ~ 7677005 (+)
LOC110498886 LOC106589493 coding upstream 298407 7535032 ~ 7579012 (+)
pts pts coding upstream 348734 7525522 ~ 7528685 (+)
dnah9 dnah9 coding downstream 1469 7881330 ~ 8001224 (+)
LOC110498900 NA coding downstream 278982 8158843 ~ 8172452 (+)
foxk2 LOC106578866 coding downstream 298735 8178596 ~ 8193448 (+)
LOC110498904 NA coding downstream 327108 8206969 ~ 8210559 (+)
trnar-ccu-53 NA coding downstream 337132 8216993 ~ 8217065 (+)
G1658915 NA non-coding upstream 1482 7875296 ~ 7875937 (+)
G1658910 NA non-coding upstream 7462 7869683 ~ 7869957 (+)
G1658894 NA non-coding upstream 22545 7854653 ~ 7854874 (+)
G1658883 NA non-coding upstream 32838 7844356 ~ 7844581 (+)
G1658879 NA non-coding upstream 34507 7842648 ~ 7842912 (+)
G1658942 NA non-coding downstream 59177 7939038 ~ 7940570 (+)
G1658959 NA non-coding downstream 144869 8024730 ~ 8026845 (+)
G1659024 NA non-coding downstream 223800 8103661 ~ 8104154 (+)
G1659025 NA non-coding downstream 224496 8104357 ~ 8104587 (+)
G1659026 NA non-coding downstream 224836 8104697 ~ 8104902 (+)
G1658572 NA other upstream 172268 7704506 ~ 7705151 (+)
wu:fj29h11 LOC106589505 other upstream 856335 7015665 ~ 7074332 (+)
G1656720 NA other upstream 1883669 5990474 ~ 5993750 (+)
G1655848 NA other upstream 2647491 5227552 ~ 5229928 (+)
G1654426 NA other upstream 3921954 3949437 ~ 3955465 (+)
unk LOC106589472 other downstream 513810 8392044 ~ 8401533 (+)
LOC110498922 cssa28h17orf62 other downstream 644431 8524125 ~ 8527761 (+)
G1661477 NA other downstream 2171761 10051622 ~ 10052089 (+)
G1662037 NA other downstream 2596306 10476167 ~ 10476689 (+)
LOC110499585 NA other downstream 2922823 10802684 ~ 10805251 (+)

Expression

LOC110498895(LOC106589487) Expression in all Baseline Samples

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The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 1000.
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LOC110498895(LOC106589487) Expression in each Bioproject

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LOC110498895(LOC106589487) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network