LOC110498903 (wdr45b)


Basic Information

Item Value
gene id LOC110498903
gene name wdr45b
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8197192 ~ 8207003 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036955701.1
GAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagCATTGCTTGCAGTAAATCGAGGCCATTCTGCTGCACACAGGGGCACAGCATTGTGACAGCGAGAGCCAAGGTACTTCCTTCCCGCTCCTGATGTGTGTGAGATGAGatggatctgtctgtctgtggctggGTTGGTGCTCTGGTTGGATGAGGAAGGCTAAATGAGGAAGTTAATCATTCCGCCACTGAGCCCTGCACATGTGACTCCTCACATGACCTGGTCCAAAGTCATAATAGGAAATGgcttactgtactgtagggaaagGATTAGCCTATAGTATAGGCCAGGGATGGCCTAACCTGGTTCTGGAGGGTTGCtgcagggtgtgcaggcttttgttgatATGGGTCTAAATAACACCAGCACTACAGTAATTTTTATTACAGTGATGCCTCATGCATGCTGTAAAGGTTTGCTATAATATGCAGATGGAGTGAAGAGTTGTTTGCTATTTAGTAAAACTTTGAGATATTAAAACTATTTAAATTCTCCTTGTCAGGGACGGATCTCTCTAGTCACATTTTATAGATCTTATTGGAATAATGGTTTGGATAATTGCGGTGTTTTTTTAGGCGACACCCTTGATTCTCATTGGCTCAGTTTATTCGCCACCCGCCAGATTGACAGCTTAATGGCCAATGAGGTGATTATATGTGTCTTCCAGAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat
>XM_036955702.1
GAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagCATTGCTTGCAGTAAATCGAGGCCATTCTGCTGCACACAGGGGCACAGCATTGTGACAGCGAGAGCCAAGAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat
>XM_021575601.2
TGGCTCTGGCACAGGAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat
>XM_021575599.2
CTATCGCAGTGTCTATGGGAGTGCCATCCCCTTAAGCAGACAATGCTAAAAGGCCTGATTGAACTATCTTCATTTATCGACCATATTTGATGAAACTCCCACTCGATCACTCGGTGCTCTTTTGACCGTCCTGGATGAACCAAGAGCTGTGTTGTTTTTCCTAACTGGCTCTGGCACAGGAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagGGGCACAGCATTGTGACAGCGAGAGCCAAGAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat
>XM_021575603.2
CTATCGCAGTGTCTATGGGAGTGCCATCCCCTTAAGCAGACAATGCTAAAAGGCCTGATTGAACTATCTTCATTTATCGACCATATTTGATGAAACTCCCACTCGATCACTCGGTGCTCTTTTGACCGTCCTGGATGAACCAAGAGCTGTGTTGTTTTTCCTAACTGGCTCTGGCACAGGAGaaatggtagctagctagcattctaTGAAAATTTGTCTAACGCACGACTGTGATTATCTGATCGAAATAATGAATTTACTACCATCAAACGCACATGGGAACGGACTACTGTACGCGGGATTCAACCAGGATCATGGATGCTTTGCTTGCGGAATGGAGAATGGGTTTAGAGTGTACAACACAGATCCactcaaagagaaagaaaaacaagGGGCACAGCATTGTGACAGCGAGAGCCAAGGTACTTCCTTCCCGCTCCTGATAGTTCATGGAGGGCGGGGTCGGGCATGTGGAGATGCTGTTCAGGTGTAACTACCTAGCGCTGGTTGGAGGAGGAAAAAAGCCCAAATACCCACCTAACAAAGTGATGATCTGGGATGACCTGAAGAAAAAGACGGTTATAGAAATCGAGTTCTCCACGGAGGTCAAAGCAGTGAAGCTTCGAAGGGACAGGATCGTGGTGGTCCTGGACTCTATGATCAAAGTGTTCACGTTCACCCACAACCCTCATCAGCTGCATGTGTTTGAGACCTGCTATAATCCCAAAGgtCTGTGTGTGCTCTGTCCCAACAGTAACAACTCTCTGCTGGCGTTCCCGGGGACCCACTCTGGGCACGTGCAGATCGTAGACCTTGCCAACACAGAGAAGCCTCCAGTGGATATCCCCGCCCACGAGGGGGCGCTGTGTTGCATCGCCCTCAACCTGCAGGGAACCAGGATAGCCACTGCCTCCGAGAAAGGGACCCTGATCAGAATATTTGACACCATGGCAGGCCACCTGATTCAGGAGTTGAGGCGAGGGTCACAGGCTGCTAACATCTACTGCATCAATTTCAACCAGGATGCGTCCCTCATCTGTGTGTCTAGTGACCACGGTACAGTCCACATATTCGCTGCAGAGGACCCCAAGAGGAACAAACAGTCCAGCCTAGCCTCGGCCAGTTTCCTTCCTAAGTACTTCAGCTCCAAGTGGAGCTTCTCCAAGTTCCAGGTTCCATCAAACTCGCCGTGTGTGTGTTCCTTCGGAACAGAACCCAACTCTGTCATAGccattTGTGCTGATGGCAGCTACTACAAGTTCCTGTTCAATCAGAAGGGGGAGTGTTCCCGAGACGTCTACGCACAGTTCCTGGAGATGACAGACGAGAAGATCTGACCTTTCACCCTACCACCTCCTGCAAACGGACAGACGTGTACATGGCGGATGGGTTTATTTTCTGGAGCAGGAGGACGAGGGGGATGGACAGAAGGAGGAGATGATGTTTCTGCTCACCCACTGCTGATGAACTCTACATGAAGCGTCAGAGGGAAGGTGAGAGAGACACCATCTCGGAAACAACAGAGGAATGAAAGATGGGCCGAGAGCCCTCTGACAACCTACTTAAAGACTCCCTGTACAACTAGACAACTACAGAAAGACAGGGGGACGAGAACACTCTAAAGGACGTCACCTGGGCCTCCTTGTCCTGCTAGTCCGGGGACGAACGAGGGAGACTTGCTTTTTAAAGATGTCTTCCGTGAAATGTACGATGATCGGGCGGTTATTTTTTAAAGGTGTATAGCGTTGATTCTAATAGGTAGATGCATAGAAAACAAATCTTGTCAACTAACACCGCCTAATCTAACTATAGGGAGTGCCTCTGAGCTGAATCGAGtggagtgtgtgtatatactcgcatacatacagtgcattcagaaagttcagaccccttcactttctatattttgttacgttacagccttat

Function

symbol description
wdr45b Predicted to enable phosphatidylinositol-3,5-bisphosphate binding activity and phosphatidylinositol-3-phosphate binding activity. Predicted to be involved in several processes, including autophagy of mitochondrion; autophagy of nucleus; and protein localization to phagophore assembly site. Predicted to act upstream of or within autophagy. Predicted to be located in lysosome and phagophore assembly site. Predicted to be active in cytosol and phagophore assembly site membrane. Predicted to be extrinsic component of membrane. Orthologous to human WDR45B (WD repeat domain 45B).

NR:

description
WD repeat domain phosphoinositide-interacting protein 3 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036955701.1 False 2360 mRNA 0.48 10 8197192 8206824
XM_036955702.1 False 1765 mRNA 0.49 11 8197192 8206824
XM_021575601.2 False 1709 mRNA 0.49 10 8197192 8206838
XM_021575599.2 False 1904 mRNA 0.49 11 8197192 8207003
XM_021575603.2 True 1926 mRNA 0.49 11 8197192 8207003

Neighbor

gene id symbol gene type direction distance location
LOC110498897 LOC106589483 coding downstream 112826 8019327 ~ 8084366 (-)
myocd myocd coding downstream 360911 7699285 ~ 7836281 (-)
LOC110498730 LOC108271865 coding downstream 534493 7654654 ~ 7662699 (-)
LOC110498893 LOC106589491 coding downstream 544436 7638900 ~ 7652756 (-)
gas7b LOC106589492 coding downstream 558659 7581918 ~ 7638533 (-)
trnar-ucg-4 NA coding upstream 16688 8223691 ~ 8223763 (-)
LOC110498906 LOC106589479 coding upstream 17087 8224090 ~ 8246266 (-)
LOC110498910 LOC106589475 coding upstream 151920 8358923 ~ 8376264 (-)
LOC110498913 h3f3b coding upstream 179982 8386968 ~ 8389308 (-)
LOC110498732 LOC106589471 coding upstream 194194 8401197 ~ 8415355 (-)
G1659654 NA non-coding downstream 42167 8154615 ~ 8155025 (-)
G1659624 NA non-coding downstream 87346 8109527 ~ 8109846 (-)
G1659612 NA non-coding downstream 102722 8091328 ~ 8094470 (-)
G1659572 NA non-coding downstream 125144 8043573 ~ 8072048 (-)
G1659521 NA non-coding downstream 212269 7984278 ~ 7984923 (-)
G1659685 NA non-coding upstream 15938 8222941 ~ 8223164 (-)
G1659698 NA non-coding upstream 40968 8247971 ~ 8248195 (-)
G1659700 NA non-coding upstream 45366 8252369 ~ 8286645 (-)
G1659721 LOC106589477 non-coding upstream 77507 8284510 ~ 8374399 (-)
G1659752 NA non-coding upstream 126859 8333862 ~ 8334150 (-)
LOC110498864 LOC106589517 other downstream 1625737 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1687612 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1689263 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1696984 6499834 ~ 6500208 (-)
G1657768 NA other downstream 1817685 6377342 ~ 6379507 (-)
G1661023 NA other upstream 1192114 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 1215780 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2269960 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2914910 11121913 ~ 11158776 (-)

Expression


Co-expression Network