LOC110498906 (LOC106589479)


Basic Information

Item Value
gene id LOC110498906
gene name LOC106589479
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8224090 ~ 8246266 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575606.2
cagagtgagagagagagggagagagagagagtgggaaaacACACAAGTGTCAACAACTCAGTTTTATTTTAGACCAAACAAGTCCCCTATAAGAAACAATAATTGGGCAATTAAGACGTGATGTTTTAAAGCGGTGTTCGagtctctcgtgtgtgtgtcattgtgtttcGTTTAAAAACGGTGAAACGACCCACTATCTTGAGAAGGTTGTTTGGCAGTGTTTTGTGGGACTGGGTGACTGCTGCCAAGAATGAACCCACGTTGTTTGTTTATCTGCTTCATCTGCCTAGATGCGGTTAACGTCACAGCTCTCTCCTCATTCTCGTGTGGCGGCAGTTGCTAATGTTATTCCAGAGGCGGGCGGGacagtgagtgtatgtgtgtgtctgactgtggaCCTGGTTTGTAACCGAGGTTCTTCTGGGCTGCAGGACAAGGCGGGTGGGAGTATCCGTGTTTCGATGCTAGGAATGGAGGAATTTGTTACCGAGGAGGAAGAGCCATGGTACGACCAGCAAGATCTCGAATCGGacctcCACTTGGCGGCAGAGCTGGGGAAGACTCTGTTAGAGAGGAACAAGGAGCTGGAGGATTCTCTACAGCAGATATACATCACCAATGAGGAGCAGGTGCAGGAGATCGAGtaCCTGGTTAAGCAGCTTGAGGTGCTGAGGGAAATGAATGAGCAGCATGCTAAGGTGTACGAGCAGCTAGACGGGACAGCCAGAGAACTGGAGCTCACCAACCATAAACTGGTTCTGGACAGCAAGGCCTCGCAGCACAAGATAGAGAGGTTGACAGGGACCATCGAGACCCTACAGACTCAGGTGGAGTCTCTCTCTGGGCAGGTGGAACAGCTCCACTCCCTGGAGCAGCTTAGGGTccggagggagaagagggagcgaCGCAAGACCATCGCCTCCTTCCCTTGCCTTAGGGAACTCTGCACCGCACCAAAgtatGAGGATGGGTTCGTGGTGGGCCGCTCAGACAGCTTTACCTCAGAGGCTAAACGGCAGCCAGCAGAGGAGGAGAACGAGCGTCTGAGAGAGGCGGTGTCGGCGCTGCGCTCGGCCGTGAGGGCGGAGCGGGGTCGCAGGGAGGGGGCGGAGAGAGAGTGTCACGTCCTCCTGGGGGAATTCTCCCGTCTGGAGACACGCGTGCAGGGTGCGGAGAGCTGCCAGGTACGGATCCATGAACTAGAGTCAGAGCTCCAGGAACTCCAGCAGCTCCGACGGGCGAGGACCCTCCTCCTTTGCAGCGAGGACGACGGCGTGGGCTTCACCCAGACCCTCCTCAACAACACCCCTGAAACAGACAccatggagggggagggaggagaagtggGTGGAGGGATCAGGGATGAGGGCGAGGGGGGAGGAGGCTTAAGCGGAGAGTCGTTACCTGCCTCCAGCCCCGTCAGGAAGAGCTGCAGCGACACAGCGCTGAACGCCATCGTGGCCAGGGACGCATccgggaggagaagagggagctACGCGATCCATGCCAACAGCGTCCGTAAGAGAGGGATGTCCATCCTGAGGGAGGTGGACGAGCAGTACCACGCTCTGCTGGAGAAGTATGAGGAGCTGTTAGGGAAGTGCCGGCGTCACGAGGAGTCCCTGTGTCACACAGGGGTGCAGACCTCGCGCCCCGTCTCCAGGGACCCCTCCATGAAGGATTGCGCCATGGGCTCCACCCCTGcacccccacccacccccaccgAGTCCCCCTCCACCCCCGAGGCCATGGAGAGCATCAGTAAGCAGGTGGAGGCAGTGGATAAGCGGCTGGGCCAGAACACGCCAGAGTATAAGGCTCTGTTCAAGGAGATCTTCTCCCGTATTCAGAAGACCAAGACAGAAATCAAAACTACCAAAGCCACCAAAGCCCCTAAAGCCAGCAAATCTGGCAAGTCCAGTAAATAAGAATGATAGTGGACTGGCTTGGTAGCATAATGCTTCTTTCATGCTTAAAGCGCTTCAGATTGTAAGGGGGCAACATGCCTCATACACTACCGATGTGTAGCACTTGTGAGTAGGCTTCTGTATGGGTATGGTCTCCTGTCTGCTTCTGTTACTAAGTACCAATCGACCAATATGCTACTAAAACCAATCTACTGCTAATGCTATCCGCTATTAGCACCTGCCTACCTTTTCCCTTGAGATGGAACACATTCTTTCAGCTCTCTTTTGCTAGCTAACTCACAGGGAGGATACCTGTCACCCACAACCCGTTGGACATGAAACATGGATAGAATAGGTGCACTAAACCCCCAATGCTTCACAGTAAAAACGGTACTGTTGATTCTCCACCTCAACAATGACCTCTGAGTTCTCCAAACGTTGGATTGTACTGAAACAAAAAAGTTAAGTTGGACAAATAACAAGTCAACTCAAGGTTCTACCTTCAGACCCTGCTGTGCTCCCCCCCCCAGCCTACATCGCCTACTGTCCGCCTGAACAATGGACTTAAGATGCCAACAAAAGCGAAACAGAAAATGTATGACTTTCTGCCCAGAGGACATTGCGACCTTGTCTTGCACTGCGCTGTGACTGTATACTCGTGACCTtagtactgtattttatactcTAGAGGTGCTTACCTTCCAGGTCCGGAGAGACATAAGCAATTAGTGTCTTGTCAGAATGTCACAGGGTTGGAACCGGGTTCGAGGTACACATGGACTCTTGGGGCAATCCTGAAAAAAGACCCATGTTCATTATTTCTGTTTGTGGGGGTGTCAAGATTTGTTCTAGCAGTGCCCAGAGACTCCTGTAACCCTGGAATTGAATGGTAGTTGGCTGGGTATGTCCACTAGCCTAGCGCTAGCTATAGCTGCAGTCTGTGTACTGACAAGATGCAACAGACAATCCAAACAGATGGTTGTCTTTTCTGTTTGCTGGGGCATTATCAACACTCTCGCTATATTAGGTAAAGGTACAACTGACGCATGGTCAAGTCAAATGTGATGTTTTAAACTGTCAATATTTCGGGGTCTCGTTCCATTTATGCCGTTTTTTTGATTGTCGGGTTGATGATTTTCACCCTCCCCTACAAACAAAATGTGGTGGGAAGGAACGATGGGATTGTATTGCAAATTGTAACGTTAAGCCTAAGACACATTTTTACGTTAAGCCTGTTTAGACAAAGTTGCTTTAGACAGGAAGTGATGGATAATTATATAGCCTAACCACCACCAGTATTACTAACCATTAAACCTGGTCTGTTAACACTAACCCAGCTCACTAACTAAACACTAACACTACTGCTGCTGCATTGCACCTTACAGCATACAGTAGGAGCAATGCCCCTGTCTTGGCTAGCAACACTCCAACCACCTTTCCTTATTATCATGAATGTTATAGTGGTTGCATTACTTTGAATCATGTACTCACATTGTAATGCCATAACATATGGGGAGGAGAAAATGTACTCAGCAATGCACCTGCAGTATACAGGAAACAGTATGTATTTCTTAGAGCTAACTAACTCAAGGTCTTAAACTCAACGGAAGCTTCAAACCTATTTTAGCAGCCACAGCATTTGGCGAGAGATCAATGCTGGTGTGGCGTTGTAAAAGTAAAGCTGTCGAGTGGAACAAAATGAGGAAAGAAAAGAGAAGTCAACAGAATCATTTGAAGCAGAAACGTCTTCTTGTTTGCTCCACAGTGTTATAATGGGTTGAATGTGCCAGTTCCAAGCGGAGTTTTATTTTCCTCTCAGGGTCAATCAAGTGTTACTGAGTGAAGAAAAAGGGTATGATGTCTTGTGGAGGCTTACTGTCAGTCTGTCATAGCAATGTTCACTCCTGGTCCTGCAGGGCCGCAGTATGTGCAGGCTTTTTCCCCAGCCCAGCATTCAGCTGTACTGCTGGGCTGTAACAAAAGCCTGCACTCCCTGTAGCTCTTCAGGGCAAGAAGATAAGGACACTGTATCATAGTAATGGTAACAGAAAAGGTTCCGATATATTCTAAGAGGGAACAATGCCAAAATGGAACCATTTGACTGTCCTTTGATGGCTCCTTGGCTTTCTCTGTACTGTAATGTTTTACAGATTGcactttgaaaaaaaaaaaaatgtttctgcCTCCTCATTTCTTGCGTATTTATACATGGATATTTACTGCCTATTACATGTGTATTCATTCCAttcttgtgtgtgtctgtgagcatTGATTCAACACTTATCTGCTATGGTGCCTACATGTGATTGTATTATTGATATACTGTATCTTTAGAATGAAAATCATACTTGGTTTTTATTTAGCTATCTACTCAACCTTTGTCATTCAGATGAGCATATTATTAGTTTTATTAGCTTATTAGTTAGCCTTTGGCACCATAGGTTTGCCATTGTAGCAAGCCATGTTAACTCTCTCTCATTGAACTACGAACCATTCTTGTCGCATTCTGTATCATTGACTAACTTGTCTGCTCTGTGCAATTAAAGCATTGGAATTTAAATATGA

Function

NR:

description
cerebellar degeneration-related protein 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575606.2 True 4472 mRNA 0.48 6 8224090 8246266

Neighbor

gene id symbol gene type direction distance location
trnar-ucg-4 NA coding downstream 327 8223691 ~ 8223763 (-)
LOC110498903 wdr45b coding downstream 17087 8197192 ~ 8207003 (-)
LOC110498897 LOC106589483 coding downstream 139724 8019327 ~ 8084366 (-)
myocd myocd coding downstream 387809 7699285 ~ 7836281 (-)
LOC110498730 LOC108271865 coding downstream 561391 7654654 ~ 7662699 (-)
LOC110498910 LOC106589475 coding upstream 112657 8358923 ~ 8376264 (-)
LOC110498913 h3f3b coding upstream 140719 8386968 ~ 8389308 (-)
LOC110498732 LOC106589471 coding upstream 154931 8401197 ~ 8415355 (-)
trim65 LOC106589467 coding upstream 197046 8443312 ~ 8467142 (-)
fdxr fdxr coding upstream 234084 8480350 ~ 8501294 (-)
G1659685 NA non-coding downstream 926 8222941 ~ 8223164 (-)
G1659654 NA non-coding downstream 69065 8154615 ~ 8155025 (-)
G1659624 NA non-coding downstream 114244 8109527 ~ 8109846 (-)
G1659612 NA non-coding downstream 129620 8091328 ~ 8094470 (-)
G1659572 NA non-coding downstream 152042 8043573 ~ 8072048 (-)
G1659698 NA non-coding upstream 1705 8247971 ~ 8248195 (-)
G1659700 NA non-coding upstream 6103 8252369 ~ 8286645 (-)
G1659721 LOC106589477 non-coding upstream 38244 8284510 ~ 8374399 (-)
G1659752 NA non-coding upstream 87596 8333862 ~ 8334150 (-)
G1659779 NA non-coding upstream 144147 8390413 ~ 8390816 (-)
LOC110498864 LOC106589517 other downstream 1652635 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1714510 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1716161 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1723882 6499834 ~ 6500208 (-)
G1657768 NA other downstream 1844583 6377342 ~ 6379507 (-)
G1661023 NA other upstream 1152851 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 1176517 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2230697 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2875647 11121913 ~ 11158776 (-)

Expression


Co-expression Network