LOC110498910 (LOC106589475)


Basic Information

Item Value
gene id LOC110498910
gene name LOC106589475
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8358923 ~ 8376264 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575611.2
tcactcactcactcactgcagTTGCAGTAGATAGAGCCTGGCGCATGAATAACGGTAGTGCGGTGCAGAGTAGGCTACAACAGTAGTTAGTCATAGGTCCTTCTCCTACTGAGAACATTTTCTGGACTACAACCATTTCCTTGTGGATTCCCTAGGGCCTCTCCCCCAACTGCCAACATGATGAAGGAGTGCCTCCAGTTCCTCATCGAGCCGGCGAAAAAAATTAAGATCCGCCTCAAGGAGTCTCGTAAGAAAGTGACAAATGAGAAGAATGAACCTTTAGTGGAGAGTCAGCTGTTTATAATGGAGCTGGCCAGGGAACTCAACAGACTGTGCcagaGGTCAAATGTCCTAGCCCACATCTGGACCAATGAAGACTCCTGGCCTCCCAGTGTGTGTAGAGAATACATAGTGGAGTGGGCTGCCGTGCTGGAGAATAGAGTACAGCCAAGGAGCATCCAGACAGAGCTGCAGGCTGACAGGCCAGAGAAGAGGGAGTGGAACGGTCGCCTGTTGTGTATgctggagacaggtggagagtATGACATGGCATCCCACAAACGGGTCATCATGGACTGGACACACCAGCTCAGAAACAAACTAGAGcccATTGTCTGGCCCGGTGAGCCCGTTTTGATGATGTTGGATGATCTGGAGTTCCAGTGGAGGAGGGGGCGTCTGCCGAACCTTCTCCCAGCCATGGAGCTGGTCATGTGGGTCGTGCTGAGTGCAGACAGCCCTGACAAGGAGGACGTAACCAAGCAGTGGCTGATCAGAAAACAGAGGAGTCAGAAGATTGATGCAGCCCGCTACATCCCCCATAATGTATGGAACTGGATCTGTGATGCTGCAGAGGAAGTGACCCTTGACCCCAAGACAGCCAACCCTGACCTCATCCTCTCCAATGACGACAAGCGCATGTGCTGTGGCCTGGAGCGGCGAGACATCCCTAATTGCACGTGTCGCTTCGATGGCTGGTGGTGCGCTCTGGGAAACGAGGGCTACACCTCTGGGCGCCATTACTGGGAAGTTGAAGTGGGCAACCGGGACTGGCGGCTGGGCGTGGCTAAAGCTTCTGCCCAAAGGAAGGGTTATAGTTCCCTCAACACAAAGACGGGCTACCTCACCCTGCGGCTGGAGAGGGGCTCAGACCTCAAGGCCCTGACGGTGCCTTCCACCCCGCTGGCCCAGATGCTGGTCCCCAGGAAGGTGGGGGTCTACCTGGACTATGAGCAAGGCCAGCTCTCCTTCTACAACGTGGAGAAGAGGTCCCACATCTACACGTACAACGAGACCTTCACAGAGAGACTGTTCCCTGTGTTTGGGACTGTAGAGGTGGTGAAGGGTCTGGTGATCAGGTCGGCACAGACCAGGGAACCCTGCCTCTGCCCTGGACCCTGTCTCTGGTGCTAAGCTAAGTGCTTAGATAACATATCACAGCATCTTTAAAACTGGTCCTGGAGAGCTAGCGTAGAATCCACACTTAGAGCTCGATTCAATCAGATTAAGCGTAAACCCGCGATAGCTGACACCcacatagctgatgttttggcggGGTCGGAGTTGTAACtgcgttggagctgtcaaatcggtgagcagctgctcgTAGTCATTGTCATGAAGCCACACCCGTCCCTCTCGCGCTagacgttcagaacgagaaagtGAAGACTATACATAAATAGTGACACTCAAACTGAAAATCACTCAATTTAATAATGAGGGTTTCTATGAGCTTAATCAATGTGTAGATTACAtcacacattccagtgttccaacatgtaaacaaggctgcattgGGATGGCAATGTTCACGATAGTTATAATACTGGGAGCCGCTTGtgaatttgacagctctaacacgGTTCCACCTCAGACAAACGTCAAAACAACAGCTATGTGGGTGTCGGCTAACGCAGACCTGATTGAATCAAGCCCTCAATATTGTAAACGTAGCACTATTCCGTGTCAATTCCAGGCTAGTGGAGTGCAGGCGTTTTGCTCTACTCCAGCCCTAACACACCTTATGCAATggtttgatgattagttgattagttgaatcaggtgtgttcaaattaggctggaacaaaagcctgcactccCCAGGACAAGGGTTGAAGAATAATCATTTCCCAACACTTCTTCTCTTAGTGTCTTCATACCATCTGCAAATGAAGTGGTAACTGTTTGTATTGGTTGTTAAATTGCCATAGTATTTCATGGTATAAAGACACTGTAAAGAAAGTGCTGCCCAAATTACCCAAAGATCCAATGTAGTTGAAATGCTGTAGTTCAGTGAGAATTTGCACGCAGACGAAAGACAGACAGCACGCAGTAGTCTCATAATGTGTGTCAGCATATTTTTGGAAGTTGCGGTATGATATTGACCGTGTGTATAACGGTGTGAACAATGCTTTTTTTCCCCTCCAGTCATCaataaattaacattttcaaagatCTGTTTGTC

Function

NR:

description
butyrophilin subfamily 1 member A1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575611.2 True 2467 mRNA 0.49 9 8358923 8376264

Neighbor

gene id symbol gene type direction distance location
LOC110498906 LOC106589479 coding downstream 112657 8224090 ~ 8246266 (-)
trnar-ucg-4 NA coding downstream 135160 8223691 ~ 8223763 (-)
LOC110498903 wdr45b coding downstream 151920 8197192 ~ 8207003 (-)
LOC110498897 LOC106589483 coding downstream 274557 8019327 ~ 8084366 (-)
myocd myocd coding downstream 522642 7699285 ~ 7836281 (-)
LOC110498913 h3f3b coding upstream 10721 8386968 ~ 8389308 (-)
LOC110498732 LOC106589471 coding upstream 24933 8401197 ~ 8415355 (-)
trim65 LOC106589467 coding upstream 67048 8443312 ~ 8467142 (-)
fdxr fdxr coding upstream 104086 8480350 ~ 8501294 (-)
LOC110498919 LOC106589236 coding upstream 127128 8503392 ~ 8506220 (-)
G1659752 NA non-coding downstream 24773 8333862 ~ 8334150 (-)
G1659700 NA non-coding downstream 72278 8252369 ~ 8286645 (-)
G1659698 NA non-coding downstream 110728 8247971 ~ 8248195 (-)
G1659685 NA non-coding downstream 135759 8222941 ~ 8223164 (-)
G1659654 NA non-coding downstream 203898 8154615 ~ 8155025 (-)
G1659779 NA non-coding upstream 14149 8390413 ~ 8390816 (-)
G1659777 NA non-coding upstream 14763 8391027 ~ 8391331 (-)
G1659812 NA non-coding upstream 15860 8392124 ~ 8392497 (-)
G1659816 NA non-coding upstream 26755 8403019 ~ 8403891 (-)
G1659821 NA non-coding upstream 42659 8418923 ~ 8422527 (-)
LOC110498864 LOC106589517 other downstream 1787468 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1849343 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1850994 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1858715 6499834 ~ 6500208 (-)
G1657768 NA other downstream 1979416 6377342 ~ 6379507 (-)
G1661023 NA other upstream 1022853 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 1046519 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2100699 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2745649 11121913 ~ 11158776 (-)

Expression


Co-expression Network