Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110498913 |
| gene name | h3f3b |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048584.1 |
| NCBI id | CM023238.2 |
| chromosome length | 46616863 |
| location | 8386968 ~ 8389308 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| h3f3b | Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B). |
| description |
|---|
| PREDICTED: histone H3.3 isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021575617.2 | False | 1244 | mRNA | 0.46 | 4 | 8386985 | 8389289 |
| XM_021575616.2 | False | 1229 | mRNA | 0.46 | 4 | 8386985 | 8389308 |
| TU1899604 | False | 1192 | TUCP | 0.47 | 4 | 8386968 | 8389254 |
| TU1899603 | True | 1148 | TUCP | 0.48 | 4 | 8387012 | 8389254 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110498910 | LOC106589475 | coding | downstream | 10721 | 8358923 ~ 8376264 (-) |
| LOC110498906 | LOC106589479 | coding | downstream | 140719 | 8224090 ~ 8246266 (-) |
| trnar-ucg-4 | NA | coding | downstream | 163222 | 8223691 ~ 8223763 (-) |
| LOC110498903 | wdr45b | coding | downstream | 179982 | 8197192 ~ 8207003 (-) |
| LOC110498897 | LOC106589483 | coding | downstream | 302619 | 8019327 ~ 8084366 (-) |
| LOC110498732 | LOC106589471 | coding | upstream | 11889 | 8401197 ~ 8415355 (-) |
| trim65 | LOC106589467 | coding | upstream | 54004 | 8443312 ~ 8467142 (-) |
| fdxr | fdxr | coding | upstream | 91042 | 8480350 ~ 8501294 (-) |
| LOC110498919 | LOC106589236 | coding | upstream | 114084 | 8503392 ~ 8506220 (-) |
| LOC118942031 | NA | coding | upstream | 116947 | 8506255 ~ 8509291 (-) |
| G1659721 | LOC106589477 | non-coding | downstream | 12586 | 8284510 ~ 8374399 (-) |
| G1659752 | NA | non-coding | downstream | 52835 | 8333862 ~ 8334150 (-) |
| G1659700 | NA | non-coding | downstream | 100340 | 8252369 ~ 8286645 (-) |
| G1659698 | NA | non-coding | downstream | 138790 | 8247971 ~ 8248195 (-) |
| G1659685 | NA | non-coding | downstream | 163821 | 8222941 ~ 8223164 (-) |
| G1659779 | NA | non-coding | upstream | 1105 | 8390413 ~ 8390816 (-) |
| G1659777 | NA | non-coding | upstream | 1719 | 8391027 ~ 8391331 (-) |
| G1659812 | NA | non-coding | upstream | 2816 | 8392124 ~ 8392497 (-) |
| G1659816 | NA | non-coding | upstream | 13711 | 8403019 ~ 8403891 (-) |
| G1659821 | NA | non-coding | upstream | 29615 | 8418923 ~ 8422527 (-) |
| LOC110498864 | LOC106589517 | other | downstream | 1815530 | 6568700 ~ 6582912 (-) |
| G1657869 | LOC106589521 | other | downstream | 1877405 | 6509119 ~ 6509580 (-) |
| G1657868 | LOC106589521 | other | downstream | 1879056 | 6505621 ~ 6507929 (-) |
| G1657862 | NA | other | downstream | 1886777 | 6499834 ~ 6500208 (-) |
| G1657768 | NA | other | downstream | 2007478 | 6377342 ~ 6379507 (-) |
| G1661023 | NA | other | upstream | 1009809 | 9399117 ~ 9400947 (-) |
| G1661001 | LOC106589450 | other | upstream | 1033475 | 9422783 ~ 9460115 (-) |
| G1662039 | NA | other | upstream | 2087655 | 10476963 ~ 10477185 (-) |
| LOC110498953 | NA | other | upstream | 2732605 | 11121913 ~ 11158776 (-) |
| G1663264 | NA | other | upstream | 3153308 | 11542616 ~ 11543091 (-) |
