LOC110498913 (h3f3b)


Basic Information

Item Value
gene id LOC110498913
gene name h3f3b
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8386968 ~ 8389308 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575617.2
GGTTAGTTGACGTCATGGGGAAATATAACGTTTGACTCACTTCCCCAGTTATCGTTAttcgtggtgtgtgtgtctggaggaAACGGAGTCACTTTAATTACGTTCAGTTTTGGAATAATCCAGCAGTTACCAATCGACGGACCATAATCGCCGTTATTTAAATGTTCTAGTAAGATGGCTCGTACCAAGCAGACCGCCCGCAAGTCCACCGGAGGAAAGGCGCCAAGGAAGCAGCTCGCTACAAAGGCAGCCAGGAAAAGCGCGCCATCCACCGGAGGAGTAAAGAAACCCCATCGTTACAGGCCAGGGACCGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCAACAGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACAGACCTGCGTTTCCAGAGTGCTGCCATTGGAGCTCTTCAGGAGGCCAGCGAAGCATACCTGGTGGGTCTGTTCGAGGACACCAACCTGTGTGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGGAGGATAAGGGGAGAGCGAGCTTAAATGGCATTCAACTGCCTGCTCCAGACATAATCCTATTTATCTTACTTAACaatttaatgttttatttttatttccagttttttttctttttttcgtATTTTAGAATGATAAGAGATGGGTCATTCCACAAACCTCAATTCAGATCTGGCCAATGTGAGGACAGAGGAATTTAGGAATATCTGCTTCAATTGCAAATGAGGCTTGTTTTTACATTGAGTAGAGGATAGTGTATTACATGACTGTATTGACTGTACAGTCAGATGCCCTCTTCAAATGTTAACTGTCTCATTTTGGATCCTGGTGGATAGTATAGGCTCCAGATGAGGTTGGAGCTCTtgcttgtggggggggggggggggattcaagATGTCTGAATTCTTCTCAGCTGCCAGGGGAAGGAATGGTCTGGGTCCTTCATCAATTTCCACCCTTTGTCTGTCAGCATGTCTTGCACAACACCTCACTACACAGTGGTGTCGGGATTTACCTCTTGACACTGTCTAGGATGGCCAGGAGCACGACAAAGCCCCCCTGTATATTCTGAACTGctttttacatgttattttccCAACATATAAAACCTTGGCAGCTACATTTAATACTATTTATGGAAGCGTTGTCACATTGTAGTCTTTCTATTAAATGTCTTTATGAATAAA
>XM_021575616.2
ACCAACCGGATTTATAAATGGTTAGTTGACGTCATGGGGAAATATAACGTTTGACTCACTTCCCCAGTTATCGTTAttcgtggtgtgtgtgtctggaggaAACGGAGTCACTTTAATTACGTTCAGTTTTGGAATAATCCAGCAGTTACCAATCGTAAGATGGCTCGTACCAAGCAGACCGCCCGCAAGTCCACCGGAGGAAAGGCGCCAAGGAAGCAGCTCGCTACAAAGGCAGCCAGGAAAAGCGCGCCATCCACCGGAGGAGTAAAGAAACCCCATCGTTACAGGCCAGGGACCGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCAACAGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACAGACCTGCGTTTCCAGAGTGCTGCCATTGGAGCTCTTCAGGAGGCCAGCGAAGCATACCTGGTGGGTCTGTTCGAGGACACCAACCTGTGTGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGGAGGATAAGGGGAGAGCGAGCTTAAATGGCATTCAACTGCCTGCTCCAGACATAATCCTATTTATCTTACTTAACaatttaatgttttatttttatttccagttttttttctttttttcgtATTTTAGAATGATAAGAGATGGGTCATTCCACAAACCTCAATTCAGATCTGGCCAATGTGAGGACAGAGGAATTTAGGAATATCTGCTTCAATTGCAAATGAGGCTTGTTTTTACATTGAGTAGAGGATAGTGTATTACATGACTGTATTGACTGTACAGTCAGATGCCCTCTTCAAATGTTAACTGTCTCATTTTGGATCCTGGTGGATAGTATAGGCTCCAGATGAGGTTGGAGCTCTtgcttgtggggggggggggggggattcaagATGTCTGAATTCTTCTCAGCTGCCAGGGGAAGGAATGGTCTGGGTCCTTCATCAATTTCCACCCTTTGTCTGTCAGCATGTCTTGCACAACACCTCACTACACAGTGGTGTCGGGATTTACCTCTTGACACTGTCTAGGATGGCCAGGAGCACGACAAAGCCCCCCTGTATATTCTGAACTGctttttacatgttattttccCAACATATAAAACCTTGGCAGCTACATTTAATACTATTTATGGAAGCGTTGTCACATTGTAGTCTTTCTATTAAATGTCTTTATGAATAAA
>TU1899604
CTCACTTCCCCAGTTATCGTTAttcgtggtgtgtgtgtctggaggaAACGGAGTCACTTTAATTACGTTCAGTTTTGGAATAATCCAGCAGTTACCAATCGTAAGATGGCTCGTACCAAGCAGACCGCCCGCAAGTCCACCGGAGGAAAGGCGCCAAGGAAGCAGCTCGCTACAAAGGCAGCCAGGAAAAGCGCGCCATCCACCGGAGGAGTAAAGAAACCCCATCGTTACAGGCCAGGGACCGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCAACAGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACAGACCTGCGTTTCCAGAGTGCTGCCATTGGAGCTCTTCAGGAGGCCAGCGAAGCATACCTGGTGGGTCTGTTCGAGGACACCAACCTGTGTGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGGAGGATAAGGGGAGAGCGAGCTTAAATGGCATTCAACTGCCTGCTCCAGACATAATCCTATTTATCTTACTTAACaatttaatgttttatttttatttccagttttttttctttttttcgtATTTTAGAATGATAAGAGATGGGTCATTCCACAAACCTCAATTCAGATCTGGCCAATGTGAGGACAGAGGAATTTAGGAATATCTGCTTCAATTGCAAATGAGGCTTGTTTTTACATTGAGTAGAGGATAGTGTATTACATGACTGTATTGACTGTACAGTCAGATGCCCTCTTCAAATGTTAACTGTCTCATTTTGGATCCTGGTGGATAGTATAGGCTCCAGATGAGGTTGGAGCTCTtgcttgtggggggggggggggggattcaagATGTCTGAATTCTTCTCAGCTGCCAGGGGAAGGAATGGTCTGGGTCCTTCATCAATTTCCACCCTTTGTCTGTCAGCATGTCTTGCACAACACCTCACTACACAGTGGTGTCGGGATTTACCTCTTGACACTGTCTAGGATGGCCAGGAGCACGACAAAGCCCCCCTGTATATTCTGAACTGctttttacatgttattttccCAACATATAAAACCTTGGCAGCTACATTTAATACTATTTATGGAAGCGTTGTCACATTGTAGTCTTTCTATTAAATGTCTTTATGAATAAATGCTCATGTGTTTGtgg
>TU1899603
CTCACTTCCCCAGTTATCGTTAttcgtggtgtgtgtgtctggaggaAACGGAGTCACTTTAATTACGTTCAGTTTTGGAATAATCCAGCAGTTACCAATCGTAAGATGGCTCGTACCAAGCAGACCGCCCGCAAGTCCACCGGAGGAAAGGCGCCAAGGAAGCAGCTCGCTACAAAGGCAGCCAGGAAAAGCGCGCCATCCACCGGAGGAGTAAAGAAACCCCATCGTTACAGGCCAGGGACCGTGGCTCTGCGTGAGATCCGTCGTTACCAGAAGTCAACAGAGCTGCTGATCCGCAAGCTGCCCTTCCAGCGCCTGGTGAGAGAAATCGCCCAGGACTTCAAGACAGACCTGCGTTTCCAGAGTGCTGCCATTGGAGCTCTTCAGGAGGCCAGCGAAGCATACCTGGTGGGTCTGTTCGAGGACACCAACCTGTGTGCCATCCACGCCAAGCGTGTCACCATCATGCCCAAAGACATCCAGCTGGCCCGGAGGATAAGGGGAGAGCGAGCTTAAATGGCATTCAACTGCCTGCTCCAGACATAATCCTATTTATCTTACTTAACaatttaatgttttatttttatttccagttttttttctttttttcgtATTTTAGAATGATAAGAGATGGGTCATTCCACAAACCTCAATTCAGATCTGGCCAATGTGAGGACAGAGGAATTTAGGAATATCTGCTTCAATTGCAAATGAGGCTTGTTTTTACATTGAGTAGAGGATAGTGTATTACATGACTGTATTGACTGTACAGTCAGATGCCCTCTTCAAATGTTAACTGTCTCATTTTGGATCCTGGTGGATAGTATAGGCTCCAGATGAGGTTGGAGCTCTtgcttgtggggggggggggggggattcaagATGTCTGAATTCTTCTCAGCTGCCAGGGGAAGGAATGGTCTGGGTCCTTCATCAATTTCCACCCTTTGTCTGTCAGCATGTCTTGCACAACACCTCACTACACAGTGGTGTCGGGATTTACCTCTTGACACTGTCTAGGATGGCCAGGAGCACGACAAAGCCCCCCTGTATATTCTGAACTGctttttacatgttattttccCAACATATAAAACCTTGGCAGCTACATTTAATACTATTTATGGAAGCGTTGTCACATTGTAGTC

Function

symbol description
h3f3b Predicted to enable RNA polymerase II cis-regulatory region sequence-specific DNA binding activity; RNA polymerase II core promoter sequence-specific DNA binding activity; and nucleosomal DNA binding activity. Involved in brain development and response to hormone. Predicted to be located in chromosome, telomeric region and nuclear chromosome. Predicted to be part of nucleosome. Predicted to be active in nucleus. Orthologous to human H3-3B (H3.3 histone B).

NR:

description
PREDICTED: histone H3.3 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575617.2 False 1244 mRNA 0.46 4 8386985 8389289
XM_021575616.2 False 1229 mRNA 0.46 4 8386985 8389308
TU1899604 False 1192 TUCP 0.47 4 8386968 8389254
TU1899603 True 1148 TUCP 0.48 4 8387012 8389254

Neighbor

gene id symbol gene type direction distance location
LOC110498910 LOC106589475 coding downstream 10721 8358923 ~ 8376264 (-)
LOC110498906 LOC106589479 coding downstream 140719 8224090 ~ 8246266 (-)
trnar-ucg-4 NA coding downstream 163222 8223691 ~ 8223763 (-)
LOC110498903 wdr45b coding downstream 179982 8197192 ~ 8207003 (-)
LOC110498897 LOC106589483 coding downstream 302619 8019327 ~ 8084366 (-)
LOC110498732 LOC106589471 coding upstream 11889 8401197 ~ 8415355 (-)
trim65 LOC106589467 coding upstream 54004 8443312 ~ 8467142 (-)
fdxr fdxr coding upstream 91042 8480350 ~ 8501294 (-)
LOC110498919 LOC106589236 coding upstream 114084 8503392 ~ 8506220 (-)
LOC118942031 NA coding upstream 116947 8506255 ~ 8509291 (-)
G1659721 LOC106589477 non-coding downstream 12586 8284510 ~ 8374399 (-)
G1659752 NA non-coding downstream 52835 8333862 ~ 8334150 (-)
G1659700 NA non-coding downstream 100340 8252369 ~ 8286645 (-)
G1659698 NA non-coding downstream 138790 8247971 ~ 8248195 (-)
G1659685 NA non-coding downstream 163821 8222941 ~ 8223164 (-)
G1659779 NA non-coding upstream 1105 8390413 ~ 8390816 (-)
G1659777 NA non-coding upstream 1719 8391027 ~ 8391331 (-)
G1659812 NA non-coding upstream 2816 8392124 ~ 8392497 (-)
G1659816 NA non-coding upstream 13711 8403019 ~ 8403891 (-)
G1659821 NA non-coding upstream 29615 8418923 ~ 8422527 (-)
LOC110498864 LOC106589517 other downstream 1815530 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1877405 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1879056 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1886777 6499834 ~ 6500208 (-)
G1657768 NA other downstream 2007478 6377342 ~ 6379507 (-)
G1661023 NA other upstream 1009809 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 1033475 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2087655 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2732605 11121913 ~ 11158776 (-)
G1663264 NA other upstream 3153308 11542616 ~ 11543091 (-)

Expression


Co-expression Network