trim65 (LOC106589467)


Basic Information

Item Value
gene id trim65
gene name LOC106589467
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8443312 ~ 8467142 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575619.2
ATTTTACCTCGTTTTTTccgaattcccagttgtcttgaacgctgTATTTCGGCAAGGCGGATTCTCAGCAACTGTATTTACGTCAGATGCCCTAATTTATTATATTGCACTGATCTGAAGAGGTGTGTTCTGTTTACAGATCTACTGGAGGGATGGAGACCCATAATTTGTCCTGTGCCATTTGCTTGGACCGCTTCAAAGTCCCAGTCACCATCCCATGCGGTCACACTTTCTGTCGAGACTGCATCACGGCTCACTGGGACACCAAGTCCAAATCCGACATCGGGCCGCATTGCCCTATCTGCAATGAGAAATTCCCCACTAGACCCATCCTAAAACGCAACGTGTCCCTGTCCGTCCTGGCTGAGGCCACAGCGAACAGTGCCGGTGCATTCGGTAGAGACACTGTACCGGTTATGAGGGGCGACATGGCCAGAGCCACGCCCCTGATTTTGTGTGACCGACACAAGAAGCCCCTGGTGTACTACTGCCGGAAGGACAACATGTGTGTGTGCTGCGAGTGTGCCATCTCCGAGTGTAAGAACCACGAGAAAGTGCTGGTGGAGGCTGAGAAGGAGAACCGAGAGTTACTACTGAGGAGGAAGAGTGTGGAGGTGGGAATATGTATGGAGAAGACTGAGAGGAGCATCGCTGAGCTGACAGAGAACATCACCAAAGCCAAGGTGACCCTGCAGCAGACCTCCCACTGGGTGAATGCCAAGTTTTCCATGCTGTTGAAGGTGCTAGCAGAGAAACAGGAGTCTACAGAGAACTTCATTGAGCAGGAGAAGGAGGCTTCCCTCTCCCAGGGGGAAGCTAGGTTGGAGGAGCTACAGGAAAGGGCCAAGCAACTCGGGGAGCGCCAGAGCCAGATCGCAACTCTTCGCAACCTGCCCGACATCCAGCTAATACAGGAGtctcggctggtggaggtccctCGCATGAAGGACATTCCAGTGGATGTGACCCCTAACCTGCAGGAGAGGCTCAGCGGGGTGACAGACGTCCTCTCACGGATCTCCAAGCTAGTGTCTGAGGACCTGGAGAAGGCTGTGTCTACAGCTGTGGGGCAGGACAAGCAAGGTTCTCCCCAGGATAAGCGCCCTGTCCTGGCTGTGGTCCCCAGTCCTGCTGCTCCATGCCACCCCGCTGGGAAGGAGGGCCTCAGTGAATACCGCTGcaccctgacctttgaccctCGCACAGCCAACAGTCACCTGCTCCTCTGCCAGGAGAACCTACGGGCAGAACACCTGACCTCTGGGCCGCGCCCTGTCCCGGCCCACGAAGCTCGCTTTGACCACACCTGGCAGGTGCTCTGCTTCCAGGGCTTCAAACACGGAAAGCACTACTGGGAGCTGGAGTTGTCCAAGCCATGGGCCTACCTGGGGGTGACTTACGAGGGCATCCCCAGGAAGGAAAAGGGGAAAAGGTGCATGGTGGGAATGAATGATCTGTCCTGGAGCCTCCAGCTGGATGAGCGCCAGCTGAGTGCCTGGCACAACGGCCGCCGGGAGACGGTGGCTGGCCACTCCCACCACTCCCGCATCGGAATTCTGCTGGACTACGAGGCTGGAACACTGACGTACTATGGAGATGGGCATACGCGGCTGCATGCCTTCCACTGTGCCTTCACTCAGGAGCTGTTCCCCGCCTGTTGGATAGGGGAGGGCGTGACCATCACCCTCTGCTCGCCATGACGACAACACGAAAGGGAATGACCGTGATCTAACAATCTCTTATAGGACTAGTCTTGGGAAACTATaaccctgtttatacctggtgctaacatgggtcctttgtcctgatcttgcctacattctgattgtgcctaCATTTCCAGAAATGTGTCAACATACAGTATGCTATTAAAATGTGCCTGTTGTTGGTCCATTGTGTCTCCATTTTGACCAGATTTCCTTGTCCCTTTATGCAAATTATTTCACagctttcaaaataatatttatttaagacacatattgatgtaatcagtcaatggtgccacctgtcaatgattttagagaGTGGAATAATTACGATTTAAATGGTTTCTCTGTCCGGATCTGTCTACACTTGTAAAATATCCAGACACTGTGTGTCTGACGACCACCAGTCACAATCAAATTACAATGTGTCTTGATTGTCAacacctgtctaaaaatgtgggcacaatcaggaTGTTGACaggatcaggacaaaggacacaAGTTAGAACCAGGTAAAAACGGGGCTTATGGCAACAGGTTCAGTTATTTTTCGGGAATCATA

Function

NR:

description
tripartite motif-containing protein 65-like

GO: NA

KEGG:

id description
K12031 TRIM65; tripartite motif-containing protein 65

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575619.2 True 2268 mRNA 0.52 8 8443312 8467142

Neighbor

gene id symbol gene type direction distance location
LOC110498732 LOC106589471 coding downstream 27957 8401197 ~ 8415355 (-)
LOC110498913 h3f3b coding downstream 54004 8386968 ~ 8389308 (-)
LOC110498910 LOC106589475 coding downstream 67048 8358923 ~ 8376264 (-)
LOC110498906 LOC106589479 coding downstream 197046 8224090 ~ 8246266 (-)
trnar-ucg-4 NA coding downstream 219549 8223691 ~ 8223763 (-)
fdxr fdxr coding upstream 13208 8480350 ~ 8501294 (-)
LOC110498919 LOC106589236 coding upstream 36250 8503392 ~ 8506220 (-)
LOC118942031 NA coding upstream 39113 8506255 ~ 8509291 (-)
LOC110498921 narf coding upstream 44294 8511436 ~ 8524038 (-)
hexdc hexdc coding upstream 60216 8527358 ~ 8531341 (-)
G1659821 NA non-coding downstream 20785 8418923 ~ 8422527 (-)
G1659816 NA non-coding downstream 39421 8403019 ~ 8403891 (-)
G1659812 NA non-coding downstream 50815 8392124 ~ 8392497 (-)
G1659777 NA non-coding downstream 51981 8391027 ~ 8391331 (-)
G1659779 NA non-coding downstream 52496 8390413 ~ 8390816 (-)
G1659772 NA non-coding upstream 8237 8475379 ~ 8482016 (-)
G1659861 NA non-coding upstream 42792 8509934 ~ 8510204 (-)
G1659866 NA non-coding upstream 64969 8532111 ~ 8532353 (-)
G1659870 NA non-coding upstream 67961 8535103 ~ 8536419 (-)
G1659971 NA non-coding upstream 270923 8738065 ~ 8738264 (-)
LOC110498864 LOC106589517 other downstream 1871857 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1933732 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1935383 6505621 ~ 6507929 (-)
G1657862 NA other downstream 1943104 6499834 ~ 6500208 (-)
G1661023 NA other upstream 931975 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 955641 9422783 ~ 9460115 (-)
G1662039 NA other upstream 2009821 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2654771 11121913 ~ 11158776 (-)
G1663264 NA other upstream 3075474 11542616 ~ 11543091 (-)

Expression


Co-expression Network