LOC110498919 (LOC106589236)


Basic Information

Item Value
gene id LOC110498919
gene name LOC106589236
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8503392 ~ 8506220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575626.2
CTTCTCTATCCATTTATTCAGTTGTTCACCATTTTACCCTGCCAAAAGACAGTTCACCAGTCAGTTGTGAGTGTTTTGCGCGTGTGGAAGAGTGTTTGGAGCTCTCTGATAAATGCAGCTGGTACCTAGTCGGCAGGATGGATGTTCTGTTGTGGAGATGTGTGCTGGGACTCCTCTGCAGCCCTGCAGTGCTCACCTGGACAGTTTCCCAGAGCCCCAGTGCTGTAGCTCTGATGAAGGTCAACTCCTCGGCCGAGATCCTCTGCTCCACATCGCTACCGGACCCCACAGGCCTCTACCTCAGGGGTCGATTCCACAACAACAGAGATGTGCTGTACTTGTCGATAGCTGACAGAGCAGTCGGTAGGACCACAATCCACAATGGGTTCAGAGGTCGGGTCACAGTGGTGTCAGACCAGGACCAGGAGGTCAAGCGGTGCTGTGATTTCACACTGAGGCTGTCCCAGCTTGGGGTGGAGGACACAGACAGTTACTACTGCAGCTGGAGGTACTACGATACCAAAGGGAAAGTGCTGGTACAGCGGCACAGTAATGGCACCATCATCATTGTCAGAGagagagatccagagAAGAGCTGTGGCGGCGGTCAGACCATCATGGAACTCATCTTGATTGTGTTGAGTTGGACGGCCTTCATCGTCATCTTCTTCCTCTTCATTGGAGCTCTGATGTGGCGATGCACACGGACCAGAAAGCACTACACACCAGCCAGGGACAATAGAagacaccaccatcaccaccaccagcaTGTGTGTCCACAGCACAGGCCCACTGCTGACCCACAGTTCATCTACTCCAGCAGCTCTCCAGACCATGTCAACTTTAAAGGGAAACTGTAACATTGAAGGGAATGGAATAAGTTATTCTGCAATTGCGGTAATGATTTACCTTTAGAGTGTCTACGCAGTTACGCCTACTGTCTGTTCTCACTAATGGAATGTTCTTTACTTACTGTTTTTGGCTAGATTTCAGATATATTTTCAGACGTCTGTCTGAGCAATCCATTATTTGCGTTTATTTGCCAAGTTGGTAGTTGTGCATTTCTGTTCATTGCATCTGACAGAAACATCCGTGCAATTAAATAGTGTGCAATTATGTGCATTTTGTTAGGCTACTGTTCTCATGAGCTCTTTCTCACCAAATGTCTGTTTTTCTCTTCTTTTGTGTCTCCACTTCCGATTGTTATGGGAATTGTCTATGTTAACAGAAAGACTCTTTCTATGTGACTCAGTGATGCTAACAGCAACGTACCATACCACATCCTGCAGTTTGATGTCTGACATGCTCTCAGATCATATATCGGCTGCCTAATGTGTGAACGGGTCAATTGTTTAGTTTTTTGCACATCCTGTAGATTTAAGTGTTTCGACAATGTTGTGCTAATCTGTTAGATTATCCTGCTCTTCATCTGACATGTCCTAATGTGTCCAAGCTGAATATACATTCCACGCAAGTGAGAGATATAAAATAGGCATGTGTCAGTCAAGTCAACACATAGCCATTTAAAGAGATATTGCTGCATTACTTTGTATTTATGGATTCCCTGGTCTCACTGACAGAGAGCGGCGAGCCCCAGCTGTTTAGTTGATTTATATATATCTTTTTGGGGGGTTGcgtgttattttggcattaatacgtgtcacaaatcagtttgcaaacaatgtgaaaaaaaaataaagctgcatac

Function

NR:

description
uncharacterized protein LOC110498919

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575626.2 True 1708 mRNA 0.45 4 8503392 8506220

Neighbor

gene id symbol gene type direction distance location
fdxr fdxr coding downstream 2098 8480350 ~ 8501294 (-)
trim65 LOC106589467 coding downstream 36250 8443312 ~ 8467142 (-)
LOC110498732 LOC106589471 coding downstream 88037 8401197 ~ 8415355 (-)
LOC110498913 h3f3b coding downstream 114084 8386968 ~ 8389308 (-)
LOC110498910 LOC106589475 coding downstream 127128 8358923 ~ 8376264 (-)
LOC118942031 NA coding upstream 35 8506255 ~ 8509291 (-)
LOC110498921 narf coding upstream 5216 8511436 ~ 8524038 (-)
hexdc hexdc coding upstream 21138 8527358 ~ 8531341 (-)
LOC110498924 LOC106589234 coding upstream 68977 8575197 ~ 8576515 (-)
LOC110498925 uts2r coding upstream 212988 8719208 ~ 8794591 (-)
G1659826 NA non-coding downstream 20917 8425595 ~ 8482475 (-)
G1659772 NA non-coding downstream 21376 8475379 ~ 8482016 (-)
G1659821 NA non-coding downstream 80865 8418923 ~ 8422527 (-)
G1659816 NA non-coding downstream 99501 8403019 ~ 8403891 (-)
G1659812 NA non-coding downstream 110895 8392124 ~ 8392497 (-)
G1659861 NA non-coding upstream 3714 8509934 ~ 8510204 (-)
G1659866 NA non-coding upstream 25891 8532111 ~ 8532353 (-)
G1659870 NA non-coding upstream 28883 8535103 ~ 8536419 (-)
G1659971 NA non-coding upstream 231845 8738065 ~ 8738264 (-)
G1659972 NA non-coding upstream 232971 8739191 ~ 8739451 (-)
LOC110498864 LOC106589517 other downstream 1931937 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 1993812 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 1995463 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2003184 6499834 ~ 6500208 (-)
G1661023 NA other upstream 892897 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 916563 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1970743 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2615693 11121913 ~ 11158776 (-)
G1663264 NA other upstream 3036396 11542616 ~ 11543091 (-)

Expression


Co-expression Network