LOC110498733 (cacna1g)


Basic Information

Item Value
gene id LOC110498733
gene name cacna1g
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 8840691 ~ 9039321 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036956460.1
ACTCCCTATCCTCTACGTGGTTTGAACGAGCCTCCATGCTGGTGATCTTGTTGAACTGCGTCACCCTGGGGATGTTCCAACCCTGTGAGGACCACGACTGTGAGTCGGAACGTTGCAAGATCCTGGAGGACTTTGATGACTTTATCTTTGCGTTCTTTGCGGTGGAGATGGTCATCAAGATGGTGGCGCTGGGCATCTTTGGGAAGAAGTGTTATCTAGGAGACACCTGGAACAGGCTCGACTTCTTTATCGTACTGGCCGGAATGCTAGAGTACTCTCTGAACCTGCAGAACGTGAGTTTCTCAGCGGTGAGAACGGTTCGAGTTCTGAGACCCCTCCGAGCCATCAACAGAGTACCTAgtatGCGTATCCTGGTGACCCTGCTACTGGACACCCTGCCCATGCTGGGGAATGTCCTGCTGCTCTGTTTCTTTGTCTTCTTCATCTTCGGCATTGTGGGCGTGCAGCTGTGGGCGGGGCTACTGAGGAACCGCTGCTTCCTGCCTGAGAACTTCTCACTTCCTCTGTCCGTCGAGCTCGGCAACTATTACCACACGGAGAACGATGACGAGAACCCCTTCATCTGCTCCATGCCCAGGGAGAACGGCATGCGTCTGTGTTCCTCTGTGCCCACCCTGTATGAGGAGGGAGGTCTCCAGTGTCAGATGGACATGAAGTCCTACAACAGCACAGACAACACCACCTGTATCAACTGGAACCAGTACTACAGTAACTGCTCGGCGGGACACGTCAACCCCTTCAAAGGAGCCATCAACTTTGATAACATCTGCTACGCCTGGATCGCCATCTTTCAGGTGATCACGCTGGAGGGCTGGGTGGACATCATGTACTTTGTGATGGATTCTCACTCCTTCTACAACTTCATCTActtcatcctcctcatcatcATTGGCTCGTTCTTCATGATCAACCTGTGTCTGGTCGTCATCGCCACCCAGTTCAGTGAGACCAAGCAGAGGGAGAGCCAGCTGATGAAGGAACAGCGCATCCGTTTCCTGTCCAACGCTAGTACCCTGGCCTCCTTCTCCGAGCCGGGTTCCTGCTACGACGAGCTGCTCAAACTCCTGGTCCATGTCATCCGCAAGGGGTGCAGGCAGGTGGCCCATGTCTGTCGGGCCTTGATGCGCCGTGCTGGGATGAACATCGCAgcctctccccctgccctggagcgagagagggggagccagagaaggaggaggaaggctTCCAGACAGGGTTCTGTGGTCTCCAGAAAAGGGTCGATGTCCGTTCATCACTTGGCTCAccaacaccaccatcatcatcatcactatcacctAGTGAATGGGAGTGTGAGGGGGGGACTAGGGGgtaggggggtggagggggtcgGGGGAGGAGGGGCAGACGTGGAGACGGGTTCACATAGCAACAACGGTGGCGCTGGACGGCTCATGTTGGGTCCTCCTCCATCGACCTCTGACCTGAACTTGGCGACCCCGACGTCACCAGCCAATCCCGCGCTGGGCATCATGTGCCACACAGACTGCCACCTGGAGCCCACCACCCCCACTACCCTCACCCCTACCCCTAGCCCCTTCTCCCTGGCACCCATCCCCATGTCCAGGGCTATGAAGAGGAACTCAGTGCCCTTTGCTGCCCCCGGACCTAAGAACTACCCCACCCTACAGCCCAGGACATTAATGGAGTCTAGAAGTGTCAGTGTTACAGCTAGTACCATCAGTAATATAAACCTCAACCTCAATATACCACCACTAACCTTGGAGAGGGGACCACAGAGtctggtgaacacacacacacccacgccagcccaGCTATCCAACCGTGACCTGAGTGTCATCGGAACCCTGGACCCCTCGTTCCCCTTTGACCCAGAGTCATGCCCATACTGTGCCAAGGCCCTAGCAGGGGAATCAGAGGGCACGGACGGAAACGAGAACCCCGGGGACTCAGACAGCGAGGGCATCTACGAGTTCACCCAGGACCTCCACCACAGAGACCGCAGGGACCGTCGGGACAGCCGTCAGCCCAGGAAGGGGCAGCGAAAGCTGGGTACCACGGCAGGGCGAGTGGTCCGAGCCTGGAGGCTGGTGTGTGACACCTTTAGGAAGATAGTCGACAGCAAGTACTTTGGAAGAGGGATCATGATCGCCATTCTGATTAATACACTGAGTATGGGGATTGAATACCACGaacagcctgaTGAGCTGACCAATGCGTTGGAGATCAGTAACATAGTGTTCACCAGTCTGTTTGCCTTGGAGATGTTACTCAAGGTGTTGGTCTATGGGCCATTCGGATACATCAAAAACCCCTACAACATTTTTGACGGGATCATAGTGGTCATCAGtGTATGGGAGATCGTGGGCCAGCAGGGCGGTGGTCTGTCAGTGCTGCGTACCTTCAGACTGATGCGCGTGTTGAAGCTGGTGCGCTTCATGCCCGCTCTGCAGAGGCAGCTGGTGGTGCTGATGAAGACGATGGACAACGTGGCCACCTTCTGTATGCTACTCATGCTCTTCATTTTCATCTTCAGTATCCTGGGTATGCATCTGTTTGGCTGTAAGTTtggatcagagagagatggagacactcTACCAGACAGGAAGAACTTTGACTCTCTGCTCTGGGCCATCGTCACTGTGTTTCAGATCCTAACTCAAGAGGACTGGAACAAGGTGTTGTATAATGGTATGGCTTCCACCACTCCAGTGGCTGCTCTCTACTTCATCGCCCTCATGACCTTTGGGAACTACGTCCTCTTCAACCTGCTTGTGGCCATCTTGGTCGAAGGCTTCCAGACTGAGGGAGAAGAATCCAAGTCAGTGTCGGAGGCAGATTTATCCTCGAGGAGTATGGAGGACGTGAACGGCAGTAGAAAGGATGTGTCTGGCTCCccggTCCCAATAAACGGTCATGTTGACCTGAAGACCAGTCTGACCCCTCCTCTGATTACCCATactgctgccacccccatgcccGTTCCCAAGCTGCCCGCCGTGGGTGACCCTGCCCTGGGCTACGAATCCCGACGCGGCAGCAATGTCTCCATGGACCTAGCCTCTTACGACAAGTCTCCGaccagtGCCCGTAGCACCTCCCCTTACGCCCCGTGGTGCTCTGCCAGTGGCTGGACCAGCCGTCGATCGAGCTGGAACAGCTTAGGCCGTGCCCCCTCGCTCAAACGAACAAAGCTTCAGTCTGGCGAACGGCGGTCGCTCCTCTCCGGCGAGGGAGGGTCCAGTTcggaggatgaggaggggggaggagggggaacaTCGGAGGGGGACGATGCATCCCTGTGTCGTATTAACTCCATGTCCCAGCCCAGACACAGGAGGATGGAGTCGGTGGAGACCAGGGGGTCCATAGACCTGGCCCCCGACACACTGCtacagGTGCCCTACCTGTATCGCTCAGCCAGTATGCACAGCTCCAGACCCCCCTCGCTAGGAGGCCTGAGAGCCCCAGAACACAGTGACTGTAATGGGAAGGGTACTTCGGCCCCTGGCGGGGCCCTGTCCCCTACACAGCTCTCCctggaggacaacacagaggacgacgcagcagaggaggaggtggtcgtGGGTCATTTTGCCAGGCTGTTAGGCTGGCTGGACAGGAAACAGCCAGAGTGGTGTCGACAGAGAGATACCTGGTCCCTGTACATATTACCCCCAGACTCCAGgtTTCGGATGGCGTGCAATAAGATCATAACCCACAAGATGTTTGACCACATTGTTCTGGTCATCATCTTCCTCAACTGCATCACCATCGCCATGGAGAGGCCGAGGATAGACCCATACAGCGTGgagcGTATCTTCCTCACGTTATCCAACTACATCTTCACAGCGATCTTCGTGGCTGAGATGACAGTCAAGGTGGCTGCACTGGGCTGGTTATTTGGTGATAAGGCCTACCTGAGGAGCAGCTGGAACATTCTAGATGGGATTTTAGTGATGATTTCAGCCATAGATATCCTGGTCTCATTGGTATCGAACAGCAGCCCCAAGATACTGGGCATGCTCAGAGTGCTGCGCTTGCTACGGACGCTCAGGCCACTACGTGTTATCAGCAGGGCGCCAGGTCTGAAGCTGGTAGTGGAGACTCTGATGTCATCTCTGAAGCCTATAGGGAACATCGTGGTCATCTGCTGCGCTTTCTTCATAATCTTTGGTATCCTGGGAGTACAGcTCTTCAAGGGGAAGTTCTTTGCATGTCAGGGAGATGACGTGAGAAACATCACCAACAAGTCGGACTGTATAATGGCCAACTACAAATGGGTTAGACAGCAGTACAACTTTGATAACCTGGCACAGgctctgATGTCTCTCTTCGTGCTGGCTTCTAAGGATGGTTGGGTGGATATCATGTATGATGGATTAGATGCAGTGGGAGTCAACCAACAGCCACAGCTGAACTACAACCCGTGGATGCTCCTCTACTTCATCTCCTTCCTGCTCATCGTCAGCTTCTTTGTGCTCAACATGTTCGTGGGCGTGGTGGTGGAGAACTTCCACAAGTGTCGGCGCAGCCAGGAGGCCGAGGAGGCCAAGCgcagggaggagaagagactgaAACGGATGGAGAAAAAGAGACGGAGTAAGGAGAAGGAGCTGGCTGCTCAGAGTAAGCCTTACTACTCGGATTACTCCCCCACTCGTCTCCTCATCCACAAGATGTGCACCTCCCAGTATCTGGACCTCTTCATTACCATTGTCATCGCACTCAATGTCATCACCATGGCGATGGAACACTACCAGCAGCCAAAGgagtTGGACGAGGCGCTGAAGATCTGTAACTACATCTTCACCATCGTCTTCGTCCTGGAGTCTGTCTTCAAGCTGGTGGCCTTTGGCTTCCGACGTTTCTTCAAggacaggtggaacCAGCTGGACCTGGCCATAGTGTTGTTGTCCATCATGGGCATCACTCTGGAGGAGATTGAGGTCAACGCATCCCTGCCCATCAACCCTACTATCATCAGAATCATGAGAGTGCTAAGGATAGCACgagTGCTGAAGCTACTGAAGATGGCAGTGGGGATGAGAGCGTTGCTGGACACTGTCATGCAGGCTCTGCCTCAGGTGGGGAATCTGGGGCTTCTCTTCATGCTGCTCTTCTTTATCTTCGCAGCACTGGGAGTGGAACTGTTTGGTGATCTCAtttgtGATGAGCTGCACCCGTGTGAGGGCTTGGGACGCTACGCTACGTTTAAGAACTTTGGCATGGCCTTCCTGTTGCTGTTCAGAGTATCCACCGGAGACAACTGGAACGGCATAATGAAGGACACCCTGCGAGACTGTCAACAGGAGAATGCAGGCACCTGTTACAACACGGTGGTCTCTCCTATCTACTTTGTCTCCTTTGTGCTGACTGCCCAGTTTGTCTTGGTCAACGTGGTCATAGCCGTCCTCATGAAGCACCTGGAGGAGAGCAACAAAGAGGCCAAGGAGGAGGCAGAGCTAGAGGCTGAACTAGAGCTGGAGCTCCAGCATGGAGGAAGGGGAGGGTGTGGCAGTGGGAGATCACCCCAGCTAAGCCCTCTGGCCCTGGGCATGGAGGAGGGATCTGGCGGCTCCCCCTGGAGGTCTCCAGAGAGGGAGATCCAGAGGGGCAATGTGATGGATTCTCCCCCAGCAGATATCACTAGAAGAGACTCCATACACATCAGCACTGATGCTCCGCTAGGCCTGGAGCCACCACTAGAGGTGGAGTTACTTGATCCTGGGGAGCCGTTGGAGGACAACCTGTTGAGTGTACGGAAGTCAGCGGTGGGCCGCACCCACTCTCTACCCAATGACAGCTACATGTTCCTGCCTCTGGAGCCCTTCGGACCCCCAGGAGCCGGCCTGGCTCCTGGCTTATCTCCAGTACTGACACAGTCTACAGGGCCGCAGCACATAGAGGCACTTAGCAGCGCCCTGTCAGGCTCCAGTACCTCGGTGCGGTCCCAACCAGAGGAGAGCTCCCAGCAGTCGGCTGTGCCTACAGACATCTTCAGACCCATCAGTCCTCACAGCCTCTCAGACTCAGAGAATATACCCCGACTACCCCcgccacagcacacacacacacttagccgcACACTCCGCAGACAGGTGGCAGTATCTAATGATTCCCAGGAGGCTCTGTGGTCTGACGGAGGGGAGGGGGTCCTAAATGTAGCTTCCCTagccctccccctttcctcctcctcttcctcatcctcccatCTTCACCAGCAGCCTTCTCTCTGGCTGGTCCCTGCCACCCCAGGGGCGTCCCCTCAACTGTCGCGCCCCAGTAGTGTTCACACCCAACACCCCTTCTCAAACCACGACCagcaccacctctcctcctcacccaactccccctcctccctctcctcaccccctcctcccctcccctccgctCGCCCCTGGAGACAGGAAGAGGCCTCGGCAGACCACGAGGTGTCGCTCATCAACCGGGCGGGGCTGGCGGGGAGTGAGGATGTCACCGGTGTCGGACTGGAGTCAGAGGTCGGAGGTCTCAATGGCAGTTACCAAGGTCATGAGGTTGGCCGTGGTGAGGGGAGCCGGCCATGCCTGAGACAGCTGAAGAGGTTCCACAGCGCTGACGCCCAGGGCCGGAGCATTCTAGCGTCCCGGCCACGCCCCCTGTCCTGGTTGGACGATCCTCGGCGCCACTCAGTGGAGGTGTGTTCGTCTGTAGAGTCCAGTCCCCAGCGCAGCACCACGTCCTCGGGGTTCGTCTCCCGAGCAGACAGCCTCCAGATCCACTCCCAGACCACAACAAAGACCCTGCCCTCTCCCCGACGCAAGAAGAAAATGAGCCCCCCGTGTATCTCCGTAGACCCCCCTGATGGACTGGAGTCCCAGCCCGGCCTCCAACCTACCCTGGGAGGTTTGGGGGGCCTAGGGATGCCCCCTCCCTTACCCAGCCGGGATACCTCCTGTCTGAGGAGGCGGGCTCCCTCCAGTGACTCCAAGGACTCCTTTGACCTCGGGGCAGGAGAGGGGCTGGGCCAGGAGGGAGGGGGGCCCAACCCCAAGCTGTTGACTCTGCCCAGCTTCTCCTTTGAGAAGACAAGCTCTGAGCActgaacactcacacacactgatgtacacacacacactaacacacacacacacacacagcaaaccaTTAAGCACataggcacacagacacacacatgcaaacacacgaTACACTTGGTGTATCCGTGATGGTGATAGTCGTAGTAATAATACCGTAGAGAGTAATTATGGTAAAACTACAACAAAACGGTCAAATCATCCTTGGTTTTATTGAGGATCCGTGCAGTACTGTCGTAGTGTGACCATCCCTTGTCTTTGTATTGTTGTACTGCCAAAACCACAAGAACGTGAAAAGAACACAGCATAAGCAGAGTTGAAACAAGAATACAAACATGACTGTTTCTCTTCTACCACACCTGCATGCCGCCATTGGCTGCAGGTCGACCCCATGACCTCTGGAGTGTCAGCAGCACCAATAACTTTGGATAGCGCCTGCCTGTGGCCACTATTGGGAATGCTCAGTGTTAGACAGTGGGACTTCACCCTCACACGGGCAACAGTGGAGGTACAAAGCAATATGAACGATTTAGAGACACTATTTTCTTAAATTATTGGGCCATAGTGTTTGTACAGGATGTAGATTTTTTAATTatttcattatatattttttgggggtgaTCTTTTTTGTGATGGGTTTTAATTTTTCTCTGTTTGTTTCAATGTTCGAATTTTTTTTTAGCTAGTCAGTTTTGTTTAATTTTAGGGATATTTTCTAGCTTTCTTGATTTGCTGAGgaaagtgatttttttttccaAAGTGCTGAGAATCATGTATTTGTaggattaatatatatatataaacaactCATTAAACTGAGCTTGGATTTTTAAGCACAAGAAGGGGACTTTGGTggtttgaaggtaggcaacaGAATGGTATAAGTCAATGTGTTGTTATTTACTTCATAACAAACATTACAGACTAAAACTTTAGAGCAGTGTTTGAAGATTTTTATTGACAGGATAAAATCTAACGAGATGCATTATCATATTTTCAAGGCTGTCCTGATTTCACAAAACACACATACAATAATATTCAATCCAACATACTCTGATTTCTTCAACACAATCCTGGGAATTCGTTATTTACGTCTTGAAAGAACTTGATGTAGTATGTctgaatctacagtgccttcagaaagtattcatatcccttgacctattccacattttgttgtgttatagtctgaattaaaaatggatttaaaaaa
>TU1900089
GGGACTTTGGTggtttgaaggtaggcaacaGAATGGTATAAGTCAATGTGTTGTTATTTACTTCATAACAAACATTACAGACTAAAACTTTAGAGCAGTGTTTGAAGATTTTTATTGACAGGATAAAATCTAACGAGATGCATTATCATATTTTCAAGGCTGTCCTGATTTCACAAAACACACATACAATAATATTCAATCCAACATACTCTGATTTCTTCAACACAATCCTGGGAATTCGTTATTTACGTCTTGAAAGAACTTGATGTAGTATGTctgaatctacagtgccttcagaaagtattcatatcccttgacctattccacattttgttgtgttatagtctgaattaaaaatggatttaaaaaatgc
>TU1900081
acacacacacactaacacacacacacacacacacacacagcaaaccaTTAAGCACataggcacacagacacacacatgcaaacacacgaTACACTTGGTGTATCCGTGATGGTGATAGTCGTAGTAATAATACCGTAGAGAGTAATTATGGTAAAACTACAACAAAACGGTCAAATCATCCTTGGTTTTATTGAGGATCCGTGCAGTACTGTCGTAGTGTGACCATCCCTTGTCTTTGTATTGTTGTACTGCCAAAACCACAAGAACGTGAAAAGAACACAGCATAAGCAGAGTTGAAACAAGAATACAAACATGACTGTTTCTCTTCTACCACACCTGCATGCCGCCATTGGCTGCAGGTCGACCCCATGACCTCTGGAGTGTCAGCAGCACCAATAACTTTGGATAGCGCCTGCCTGTGGCCACTATTGGGAATGCTCAGTGTTAGACAGTGGGACTTCACCCTCACACGGGCAACAGTGGAGGTACAAAGCAATATGAACGATTTAGAGACACTATTTTCTTAAATTATTGGGCCATAGTGTTTGTACAGGATGTAGATTTTTTAATTatttcattatatattttttgggggtgaTCTTTTTTGTGAT

Function

symbol description
cacna1g Predicted to enable low voltage-gated calcium channel activity and voltage-gated sodium channel activity. Predicted to be involved in several processes, including calcium ion import; neuronal action potential; and positive regulation of calcium ion-dependent exocytosis. Predicted to act upstream of or within calcium ion transmembrane transport and regulation of ion transmembrane transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be part of voltage-gated sodium channel complex. Predicted to be active in neuron projection. Is expressed in atrium and cardiac ventricle. Human ortholog(s) of this gene implicated in cerebellar ataxia type 42. Orthologous to human CACNA1G (calcium voltage-gated channel subunit alpha1 G).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036956460.1 False 8292 mRNA 0.54 33 8840694 9039321
TU1900089 False 373 lncRNA 0.33 1 8840691 8841063
TU1900081 True 611 lncRNA 0.42 2 8841273 8857775

Neighbor

gene id symbol gene type direction distance location
LOC110498925 uts2r coding downstream 46103 8719208 ~ 8794591 (-)
LOC110498924 LOC106589234 coding downstream 264179 8575197 ~ 8576515 (-)
hexdc hexdc coding downstream 309353 8527358 ~ 8531341 (-)
LOC110498921 narf coding downstream 316656 8511436 ~ 8524038 (-)
LOC118942031 NA coding downstream 331403 8506255 ~ 8509291 (-)
spata20 spata20 coding upstream 153968 9193289 ~ 9271513 (-)
pkd1b LOC106589455 coding upstream 242036 9281357 ~ 9310850 (-)
trnaa-agc-8 NA coding upstream 289749 9329070 ~ 9329142 (-)
nme2a LOC106589447 coding upstream 467053 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 509617 9548938 ~ 9552737 (-)
G1660050 NA non-coding downstream 7861 8832548 ~ 8832833 (-)
G1660042 NA non-coding downstream 12599 8827846 ~ 8828095 (-)
G1660033 NA non-coding downstream 20591 8819712 ~ 8820103 (-)
G1659974 NA non-coding downstream 100674 8739812 ~ 8740020 (-)
G1659972 NA non-coding downstream 101243 8739191 ~ 8739451 (-)
G1660366 NA non-coding upstream 22542 9061863 ~ 9085622 (-)
G1660371 NA non-coding upstream 29184 9068505 ~ 9069024 (-)
G1660431 NA non-coding upstream 130384 9169705 ~ 9170062 (-)
G1660432 NA non-coding upstream 130753 9170074 ~ 9170283 (-)
G1660433 NA non-coding upstream 131331 9170652 ~ 9170962 (-)
LOC110498913 h3f3b other downstream 451440 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2269239 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2331114 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2332765 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2340486 6499834 ~ 6500208 (-)
G1661023 NA other upstream 359796 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 383462 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1437642 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 2082592 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2503295 11542616 ~ 11543091 (-)
G1660234 NA non-coding upstream 224 8857999 ~ 8858245 (-)
G1660249 NA non-coding upstream 31145 8888920 ~ 8889159 (-)
G1660250 NA non-coding upstream 32008 8889783 ~ 8890013 (-)
G1660279 NA non-coding upstream 68216 8925991 ~ 8932338 (-)

Expression


Co-expression Network