spata20 (spata20)


Basic Information

Item Value
gene id spata20
gene name spata20
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9193289 ~ 9271513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575651.2
ggagtcctctagctatagaacgAGGCTATAAAATGAAGCATTTGGAGACTTTTCCCACCGAATTCTGACGCAAACGAGAGCGGGAGAACCTGTCTGTGCAACAgaagtcacacacacaggcaaggaCGCACAAGTGGAGGACATGTGCGGCGGGAGAGGGTGCGAAAACGCTACGTCGGGGACCGCATCTGCACCAAGGCAAATAGGTGCTGTGACGTCGTCGCGGCAACGGCCAAGCATAGTCTAGCGACTTCTAGCGTCAAAACAAGGAGCCAATAGCGATTCTCACAAACAAAACAATAGTTGGCAACTCTTCCCAAAGTCAGTGACAAAACTGTCATAGTTGGTTGGTCGGAGAGTTGCACTTGCCGTGTTAAGCAAAGTAGGCAAACCTCCACTGAGCCAGCCAGCCCGTTGACAAGGCACATTGGATTAAGATGTTAAGACTCGCATGGGCACGGTCGTCGTCAAAAAATAGCCGCGTTGACCCAGCTCGCCTGCTAAGTATCGTTCTCCTGGGAGGTGACAACAAGTCGCACAGCCCAGAACAGAGTCGGGACATCAGCGGGCTCACACCACCCCCTGCCAGCGACAAGTCCCCCTCGCTGCTGAGTCCCAGGACGTCCCAATACTGCTTCAGTATGACAAGCAGAGCAAGTCTGAGTATGGCGTCTGGGAGCGAGGGGCAGGGTAGCCCCCCGTCCACTCCCCAGAGACCCCCCAACCGCCTGGGACAGGAGAGGTCCCCTTACCTGCTGCAACACGCACACAACCCGGTGGACTGGTATCCATGGGGACAAGAGGCGTTTGACAAAGCCAGGAGTGAAGACAAGCCTATCTTCCTGTCAGTGGGCTACTCTACGTGTCACTGGTGCCatgtgatggagagagagtcCTTCGAGGACGAGGAGATTGGAAAGACCCTCAGTGACAACTTTGTCTGTATTAAAGTTGACCGTGAAGAGAGACCTGATGTGGACAAAGTCTACATGACCTTCGTGCAGGCAACCAGCGGAGGTGGTGGTTGGCCGATGAGTGTGTGGCTGACCCCTGATCTACGACCTTTCATTGGGGGCACCTACTTCCCCCCAAAGGACAGTGGCCGGAGACCTGGACTCAAAACTGTCTTGACCAGAATTATGGAGCAGTGGCAGGATAACCGTGAAGCGTTGGAGTCAAGTGGTGAGAGAGTTATAGAAGCTCTGAAGAAGGGAACCTCTATCGCAGCTAACCCAGGGGAAACCCCACCCCCAGCCCATGATGTAGCCAATCGCTGCTTCGTACAACTCGCACACTCCTATGAGGAGGAATATGGAGGATTCAGGGATGCACCCAAGTTCCCCTCACCAGtgaATCTTATGTTCCTTATGTCATTTTGGTCTGTGAACCGTTCGTCCACTGAGGGGTCCGAGGCGCTCCAGATGACCCTACACACACTCCGCATGATGGCCCTGGGGGGCATCCACGACCATGTGGCACAGGGCTTCCATCGTTACTCTACAGACTCATCCTGGCACGTTCCCCACTTTGAGAAGATGCTTTATGACCAGGCTCAGCTGGCTGTGGCCTACATCAGCGCCTACcagGTGTCGGGGGAGCAAGTCTTTGCTGACGTGGCCCGGGACATTCTTCTCTATGTCTCCAGAGACCTCAGTGACAAGTCTGGGGGCTTCTACAGTGCTGAGGACGCAGACTCTCTCCCTGCTGCTGGGGGAAGTGAAAAGAGGGAGGGGGCATTCTGTGTGTGgatggggtcagaggtcagagaacTACTTCCTGTCGTGGTGGAGGGAGCAACAGGGGGCGCTACAGAGGCTGACATCTTCATGCACCACTACGGGGTCAAAGAACAAGGCAACGTGGACATGGAACAGGACCCTCATGGGGAGCTGCAGGGCCAGAATGTGTTGATTGTGCGTTACTCTGTGGAGCTGACAGCTGCACGCTTTGGCCTCAGTGTAGCAAAGGTCTCTGAGCTACTGGCCTCCGCTAGAGCCAAGATGGCCGAAGTCAGGAAGAGCCGTCCAGCCCCTCACCTCGACACCAAGATGCTGGCCTCCTGGAACGGTCTGATGTTATCAGGCTTTGCACGTGTCGGTGCTGTGCTGGATGACAAGGCTCTGCTGGAGAGAGCGGTGCAGGCCGCTGGCTTCCTAAAGGAGCACCTGTGGGACGCGGAGCGACAGATCATGCTTCGCTCCTGTTACCGTGGAGATGAGATGGAGGTGGAGCAGGGCGTGTCACCCATTGCTGGTTTCCTGGACGACTATGCGTATGTTATCTGTGGTCTGCTGGACCTGTACGAGGCCACGCTGCAGCCAGAGTGGCTCCGCTGGGGGGAGGAGCTACAGGACCGACAGGACCTCCTCTTCTGGGACGCAGAGGGAGGGGGCTACTATTGCAGCGACCCCACAGATCCCACCGTACTGCTGCGACTCAAACAGGacCAGGATGGTGCAGAGCCCAGTGCGAACTCTGTGTCGGCCTTGAACCTACTGCGTCTGTCCCACTACACTGGTCGTAAGGACTGGTCACAGCGGTCACAACAGCTACTGGCTGCCTTCTCTGACCGGCTGACCAGAGTCCCCATAGCCCTGCCAGAGATGGTCAGGGGCCTGATGGCTAACCACTACACACTCAAACAGaTAGTAATCTGTGGTCAGAGGGATGCACCGGACACCTCCAGTCTGCTAGCAACAGTCAACTCTCTGTTCCTTCCACACAAGgtcctGATGTTAGCTGATGGGGAGACAGAGGGCTACCTGTACCAGCGTctacccatcctctcctccctgacCTGCCAGGGTAGCAGTGCCACAGCATACGTGTGTGAGGACTTCACCTGTGCCCTGCCTGTCACAGACCCACAGGAGCTACGCAGGCTACTGCTAGAGTAAAGAAGAGCGGGAGGGATGGcgagagacatagagggagagaggaccaGATGAACCCTGTCCTAACCTGCTCCAGCTAACCCAGTCCTAACCCTGCCCCgctcacctccacctctaccttagTTTAACCTCCTGCACAGCAGGTATAACACATCCCTCTGTAACCCTACAGTAACCATACTCTCCCTGGCCATAAGGGCCCAGTCTAAATGCTCTGTAGATAGTGGGACCCACCACCTATATCAAGATGTGGAGGCGCGTAATCTCTAGGAGTCACAAGCCAGCAGTTCCAATAACAGCAGTTGTCTGCATAACTTAGTCACAGGCCTACTAAAGCGATACCAAGCAAAGGCCGTATCAGTTCTTCAGCAGTACACTAATAAACTGTGTGTagatgtcagtggaggctgctgaggggaggacggctcatagtaatggccggattggagtcaatggaatggtatcaaccaatGGCAACcacgtttgataccattcc

Function

symbol description
spata20 Predicted to act upstream of or within carbohydrate metabolic process. Orthologous to human SPATA20 (spermatogenesis associated 20).

NR:

description
spermatogenesis-associated protein 20

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0003824 catalytic activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575651.2 True 3390 mRNA 0.55 15 9193289 9271513

Neighbor

gene id symbol gene type direction distance location
LOC110498733 cacna1g coding downstream 153968 8840691 ~ 9039321 (-)
LOC110498925 uts2r coding downstream 398698 8719208 ~ 8794591 (-)
LOC110498924 LOC106589234 coding downstream 616774 8575197 ~ 8576515 (-)
hexdc hexdc coding downstream 661948 8527358 ~ 8531341 (-)
LOC110498921 narf coding downstream 669251 8511436 ~ 8524038 (-)
pkd1b LOC106589455 coding upstream 9844 9281357 ~ 9310850 (-)
trnaa-agc-8 NA coding upstream 57557 9329070 ~ 9329142 (-)
nme2a LOC106589447 coding upstream 234861 9506374 ~ 9513698 (-)
LOC110498935 LOC106589231 coding upstream 277425 9548938 ~ 9552737 (-)
LOC110498737 ca10 coding upstream 406387 9677900 ~ 9986739 (-)
G1660452 NA non-coding downstream 8178 9184824 ~ 9185111 (-)
G1660451 LOC105030512 non-coding downstream 8577 9183905 ~ 9184712 (-)
G1660449 NA non-coding downstream 10157 9182850 ~ 9183132 (-)
G1660433 NA non-coding downstream 22327 9170652 ~ 9170962 (-)
G1660432 NA non-coding downstream 23006 9170074 ~ 9170283 (-)
G1660967 LOC106589233 non-coding upstream 60247 9331760 ~ 9334929 (-)
G1660981 NA non-coding upstream 86539 9358052 ~ 9359601 (-)
G1661017 LOC106589452 non-coding upstream 120372 9391885 ~ 9395929 (-)
G1660999 NA non-coding upstream 160268 9431781 ~ 9439407 (-)
G1661056 NA non-coding upstream 203076 9474589 ~ 9474809 (-)
LOC110498913 h3f3b other downstream 804035 8386968 ~ 8389308 (-)
LOC110498864 LOC106589517 other downstream 2621834 6568700 ~ 6582912 (-)
G1657869 LOC106589521 other downstream 2683709 6509119 ~ 6509580 (-)
G1657868 LOC106589521 other downstream 2685360 6505621 ~ 6507929 (-)
G1657862 NA other downstream 2693081 6499834 ~ 6500208 (-)
G1661023 NA other upstream 127604 9399117 ~ 9400947 (-)
G1661001 LOC106589450 other upstream 151270 9422783 ~ 9460115 (-)
G1662039 NA other upstream 1205450 10476963 ~ 10477185 (-)
LOC110498953 NA other upstream 1850400 11121913 ~ 11158776 (-)
G1663264 NA other upstream 2271103 11542616 ~ 11543091 (-)

Expression


Co-expression Network