LOC110498929 (LOC106589453)


Basic Information

Item Value
gene id LOC110498929
gene name LOC106589453
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 9335133 ~ 9359628 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575655.2
AAGGGAGGAGTCTCAGCGGAGGCTAGCCAGTCAAGTTGCGCTTTGCGGGTCTGGGGCATCGGGAATCATCACCTCGAGGCTGCGGAGACAGGGCAAGGGAAAGATAGGTGGACGAGCGAGCCTCCAACAAACCAACACAGGGTCTGCATTTACATACTTCAATGCAAGCAGGCGATGTGCTTTGGATTCTGATTTGAAATTGGTTTGGGAAGTTGAAACGTGGCAAACTGGACGCCGACCAAGCTTAGTGAATTAGCGGGCGAAAGCGTTTTGGACACAGCTGGGGCGACGGCCGTTGGGAGTCAGagGTGAAGCAGTTGGGCCTGTGTGCTCCTGAGAGGATGAAGAGGTTTAGGAGACATGGCCAGGAGTCCCAAAGAGAGCGGATCAAACAGGAGCTCTATGGGTTCAACAAGaCAGTGGAGCATGGTTTTCCTCACCAGCCCAGTGCCCTGGGCTTCAGCCCCAGTCTCCAGCTCCTGGCCATCGGCACACGCTCCGGAGCCATCAAACTTTACGGTGGCCCAGGTGTGGAGTTCATGGGTCTACACGATGAGAACGCTGCCGTCACACAGGTCCACTTCCTGCCACACCAGGTGGAGCTGGTGACTCTGTTGGATGACAACAGTCTCCACATGTGGACCCTCAGAGCTCACCATGGTGTCTCTGAGCTGCTGGAGATAGGACGCTTCACACTCACTGGACCCCCGGGtgctcccCCCAGTGTAACTCGTGTAACAGCGGTGCTAGCCCACTCTTCTGGGGACCTGCTGTTGCTTGGAACAGAGGGAGGACATGTGTTCATAGTGAAGGTACCAGGCTTCAGAGAACTAGAGGAGAGGAACATCAGCCTGGAGAAAGTCACCAACAGTGTACCAGAGGAGTACGGAGGTCGTAGGAGCCTGGAGCATGTCGAGTCCTTACAGGAGAATCCCGTCAACCCACGCCAGGTTCTGATTGGATACGGACGAGGCCTCATGGTCGTCTGGGACCTGGATAGCCAATCAGCCGTCAAACACATCCCCGCTACACAGCAACTGGAGAGCGTGTGGTGGACGGAGGACGGTGGCCATGTTCTCAGTTCCCATAGCGATGGCAGCTACTGCCGCTGGAAGGTGGCTGGGGATGACCCACAGAGCGAGCAGGAGAAGTCCGAAGTACCGTACGGCCACTTCCCCTGTAAGGCCATCTCTAAAATCATCCAGCTGCCGACAGAACAGGGGCCCCCGTTCCTGTTCCTCAGTGGCGGCATGCCCCGGGCCAGCTACGGTGACAGACACTGTATCAGTGTGATCCACAGTAAAACACACGTGGCTCTGGACTTCACCTCCAGAATCATCGACTTCTTCGTCATCAGAGACGGACCAGACCATACAGGCGAACCCAGTGCATTGGTGGTCTTAGTAGAAGAGGAGTTGGTAGTAATAGATCTCCAGACTGAAGGGTGGCCGGTCATCCAGACTCCGTACCTGGTGCCTCTCCACTGCTCGGCCATCACCTGCTCCCACCATGTCTCTGCTATACCCCTGAAGCTGTGGGAGAGGGTCCTGTCTGCCGGAGCATTGCAGAACACACACTACTCTAAGAAGcCGTGGCCTATGACAGGAGGACAGAACCTGGCCCCAGACCCCCCTCAGAGAGACTTACTGCTCACAGGGCACGAGGACGGTACGGTGCGTTTCTGGGACGCGTCGGGGGTGTGTCTGTACCCCATGTACAAGCTGAGCACGGCAGGGGTGTTCCTCACTGACTCGGACCCCAATGACAACCTGAACCAGGGCACAGAGGGAGAGTGGCCACCTttcagaaagGTGGGTTGTTTTGACCCGTACAGTGACGACCCTCGTCTTGGCATTCAGAAGATCCACCTGTGTAAATACAGCGGCTACCTGACTGTAGCTGGCACTGCTGGACAGATCCTGGTGTTAGAGCTGAATGATGAGGCAGCAGAACAGACTGTGGAGGCCACCGTAGCAGACCTGCTACAGGGACAGGAGGGCTTCCGCTGGAAGGGCCACACGCGTCTGGAGGTGAGGGAGGAGCCGGTGACCTTCCCCCCAGGTTTCCAGCCCTTTGCCCTGGTCCAGTGCCAGCCTCCGGCCGTGGTCACTGCCCTCACCCTGCACTCTGAGTGGAAACTAGTAACATTCGGGACCAGCCACGGCTTTGGACTCTACGACTACCAGCAGAAAAACAACGTTCTCGTCAGGTGTACTCTGAACCCCAGTGACCAGCTGGCTATGGAAGGTCCTCTGTCCAGAGTGAAGAGCATTAAGAAGTCTCTCCGTCAGTCCTTCAGAAGGATCAGGCGCAGCCGAGTGTCCCTACGCAAACACCATGTCAACAACGCAGCTAAGTTGCAGCAGGCCAATGCTCGTCTAGAGGCGGAGCTAGCTGAGATGGAGTTGGCGCCCGTCCAGAGAAAGATAGAGCCTCGATCCCCTGACGACTCCTTCACCGGCCTCGTGCGCACGCTATACTTCGCTGATACCTTCCTTTCAGACAGCTCCCACAACACACCATCTCTGTGGGCAGGGACCAATGGGGGATCAGTATTCGCCTACCAGCTCCGCCTACCGCCTGTGGAACGCAGAGGAGAGGACCCTGTCACAGCACACCCTGCTAAGGAGATCCAGTTGATGCACCGTGCTCCAGTAGTGGGCATCTTGGTGTTGGACGGCCATGGTTCCCCTCTGCCTGAGCCCCTGGAGGTGGCACACGACCTGGCCCGCTCACCTGACATGCAGGGTTCACACAGCCTACTGGTTATATCAGAGGAACAGTTCAAgGTGTTCACCCTGCCTAAGGTGAGCGCCAAAATGAAGTTAAAGTTGACGGCCATTGACGGCTCACGCGTGCGCCGGGTGGGCGTGGCCTGGTTCGGGAGCACCCGCACGGACGACTACGGCGAGAGCGGCCTCACCGTCCTGACCAATCAGGGAGACCTCCACGTGGTGTCGTTGCCAGGGGTGAAATTGCAGGTCCAGTACCCCTGTATACGTAGGGAGGACGTCAGCGGCATTGCATCCTGCGTCTTCACCAAGCATGGACAGGGTTTCTACCTGATCTCTCCGTCAGAGTTTGAgcgtttctctctgtctgctcgCTGTGTGGTGGAGCCCCGGTCTCTAGTGGAGGTGTCCTCCCAGACACCCAGCAGCACTCTGCCACGGGCGCCGCCGGACGGGGCCTCTGTGGAACGCAGAAATTCCACGAGGGATGGCGCGGAGAGCTCTGCTAGACGTGTGATGGAGCATGCTTTGCTGAATGACGAGACTGTGCTTCAGGAGATCCAGAAGTCTCTAGAAGTAGATCAGACGACGTTCCTGGAGAATGGGACGAGTGCTCTCGCTGGAGGGAAGGTGCTGAGCAGTTGAGACTGAGCTGGTCATCCTTGTGCCTGAGACATCGTGGAGTCTGCCTAGTGACTCCTGCCGCGCGACTCCTGACTCCTGCCTCGCAGTCTACACaaacactactattactaccactactgaccacTTGGGCCCCTAGCCCCCGGAGAGACTCACCCCTGACCCCTAGCATGAGAGGCTGAACCCTGGCCCCTAACCCCAAAGACTGACTCACTGGCTTTGtcacaaatggcactctattccccaagTAGGGCACTGCTTTTAACCAAAGCCCATAAAGGGGGGTTGGTGTAGTGTATgaggaacagggtgtcatttgaggCCCACCGCTATGGAAGGACCACCGTCTGTGCCTAGGGACCAaccactgtactgtaatacccctGCTACGCTTGGTACCTCTACACCTGCCACACATTAGTAATGATTGTATGGTCATTCCGCTGACGCGCTTATCCAAAGCCACTTACAGTTCTCACACACAAGACATACTTGCATTAAACACACCCTACTCACTCATCCACCCCTTCCTCACGTTCCCTCCTCATCCCGACACCAGGCATTCAGCCTTTCACCCTTGAACTCAAGCTGACCTGTGAAACTCTGATTTGTCCAGTAGCAGCCTTGCTCTGCACATCCTCGCTTGCCTTAGTCTCCTAGAGAGAGACGCATATGGGGGAGTGGgaagatatagagaggagggggggatggacttgttttttttattcctATGATTCTTTTATTTGTAATGTAATTTTACCTGTGATTTTGTAACCTTTTTGTTTTGATTCTGTGTAATTATTGGAGATGTAAAATCTAGCTGGATGGGAAAAACTGTACAAGGGAgccaaaaatgttttttgttgttttttttatgctGACAAATCATCAAATTTATTCTGGCACTCCAAACAAGGCATTGTTTTGAGTGCGAGAGCAACATGGAGTATCTGTGGAATCCGTACTGTTAATTTTGAACCACACAAGGTGGTAGACCACCAAGCCTGGTAGCCAGACCTATTGTTGCTTTAGCCAACTCAGAAACACATCTGACTACCAGACTAGCAGTATAAGACCACTGTGCCGTAAAATGTCTCCCCAAGCTTTTGTTGCCAACTGAcctccctccttacctctcctACCGTCCGCGCATTAATGTGTAATAACCAGTTATAACTTGACGTAGGTATTTGTCCTGTGTAGCACATGACGCTACAACTTTCTATGGTGGCTTggtttttaaaatgttataatGTAAACCCTTTTTTTGAACACAGCAATGAGTAATGTTATTTAGGAATGTAATTTTAAGATATTGTAGTCAAATGTTTAATATATATGTACTATATGATTCTCTGCCTGTTAACGGTTAGGTGTGTTTTTAATGGGGGTTGGCTGCTATAGTCGGATCTCGCAACAAAATATTTTGGTACTGTTTCTTGAAATGCTGGGTATTTTAGCATTTCTGTGGTCTCTAGAATATATTTTTGTAGTGAATCATGGAGTATGAGAACCCTACTTTTTTTGATTGATAACTTTCACACTACATAATGTCCTGCTGGAAAATGAATACATGTTTTTCACAAGA
>XM_021575656.2
AAGGGAGGAGTCTCAGCGGAGGCTAGCCAGTCAAGTTGCGCTTTGCGGGTCTGGGGCATCGGGAATCATCACCTCGAGGCTGCGGAGACAGGGCAAGGGAAAGATAGGTGGACGAGCGAGCCTCCAACAAACCAACACAGGGTCTGCATTTACATACTTCAATGCAAGCAGGCGATGTGCTTTGGATTCTGATTTGAAATTGGTTTGGGAAGTTGAAACGTGGCAAACTGGACGCCGACCAAGCTTAGTGAATTAGCGGGCGAAAGCGTTTTGGACACAGCTGGGGCGACGGCCGTTGGGAGTCAGagGTGAAGCAGTTGGGCCTGTGTGCTCCTGAGAGGATGAAGAGGTTTAGGAGACATGGCCAGGAGTCCCAAAGAGAGCGGATCAAACAGGAGCTCTATGGGTTCAACAAGaCAGTGGAGCATGGTTTTCCTCACCAGCCCAGTGCCCTGGGCTTCAGCCCCAGTCTCCAGCTCCTGGCCATCGGCACACGCTCCGGAGCCATCAAACTTTACGGTGGCCCAGGTGTGGAGTTCATGGGTCTACACGATGAGAACGCTGCCGTCACACAGGTCCACTTCCTGCCACACCAGGTGGAGCTGGTGACTCTGTTGGATGACAACAGTCTCCACATGTGGACCCTCAGAGCTCACCATGGTGTCTCTGAGCTGCTGGAGATAGGACGCTTCACACTCACTGGACCCCCGGGtgctcccCCCAGTGTAACTCGTGTAACAGCGGTGCTAGCCCACTCTTCTGGGGACCTGCTGTTGCTTGGAACAGAGGGAGGACATGTGTTCATAGTGAAGGTACCAGGCTTCAGAGAACTAGAGGAGAGGAACATCAGCCTGGAGAAAGTCACCAACAGTGTACCAGAGGAGTACGGAGGTCGTAGGAGCCTGGAGCATGTCGAGTCCTTACAGGAGAATCCCGTCAACCCACGCCAGGTTCTGATTGGATACGGACGAGGCCTCATGGTCGTCTGGGACCTGGATAGCCAATCAGCCGTCAAACACATCCCCGCTACACAGCAACTGGAGAGCGTGTGGTGGACGGAGGACGGTGGCCATGTTCTCAGTTCCCATAGCGATGGCAGCTACTGCCGCTGGAAGGTGGCTGGGGATGACCCACAGAGCGAGCAGGAGAAGTCCGAAGTACCGTACGGCCACTTCCCCTGTAAGGCCATCTCTAAAATCATCCAGCTGCCGACAGAACAGGGGCCCCCGTTCCTGTTCCTCAGTGGCGGCATGCCCCGGGCCAGCTACGGTGACAGACACTGTATCAGTGTGATCCACAGTAAAACACACGTGGCTCTGGACTTCACCTCCAGAATCATCGACTTCTTCGTCATCAGAGACGGACCAGACCATACAGGCGAACCCAGTGCATTGGTGGTCTTAGTAGAAGAGGAGTTGGTAGTAATAGATCTCCAGACTGAAGGGTGGCCGGTCATCCAGACTCCGTACCTGGTGCCTCTCCACTGCTCGGCCATCACCTGCTCCCACCATGTCTCTGCTATACCCCTGAAGCTGTGGGAGAGGGTCCTGTCTGCCGGAGCATTGCAGAACACACACTACTCTAAGAAGcCGTGGCCTATGACAGGAGGACAGAACCTGGCCCCAGACCCCCCTCAGAGAGACTTACTGCTCACAGGGCACGAGGACGGTACGGTGCGTTTCTGGGACGCGTCGGGGGTGTGTCTGTACCCCATGTACAAGCTGAGCACGGCAGGGGTGTTCCTCACTGACTCGGACCCCAATGACAACCTGAACCAGGGCACAGAGGGAGAGTGGCCACCTttcagaaagGTGGGTTGTTTTGACCCGTACAGTGACGACCCTCGTCTTGGCATTCAGAAGATCCACCTGTGTAAATACAGCGGCTACCTGACTGTAGCTGGCACTGCTGGACAGATCCTGGTGTTAGAGCTGAATGATGAGGCAGCAGAACAGACTGTGGAGGCCACCGTAGCAGACCTGCTACAGGGACAGGAGGGCTTCCGCTGGAAGGGCCACACGCGTCTGGAGGTGAGGGAGGAGCCGGTGACCTTCCCCCCAGGTTTCCAGCCCTTTGCCCTGGTCCAGTGCCAGCCTCCGGCCGTGGTCACTGCCCTCACCCTGCACTCTGAGTGGAAACTAGTAACATTCGGGACCAGCCACGGCTTTGGACTCTACGACTACCAGCAGAAAAACAACGTTCTCGTCAGGTGTACTCTGAACCCCAGTGACCAGCTGGCTATGGAAGGTCCTCTGTCCAGAGTGAAGAGCATTAAGAAGTCTCTCCGTCAGTCCTTCAGAAGGATCAGGCGCAGCCGAGTGTCCCTACGCAAACACCATGTCAACAACGCAGCTAAGTTGCAGCAGGCCAATGCTCGTCTAGAGGCGGAGCTAGCTGAGATGGAGTTGGCGCCCGTCCAGAGAAAGATAGAGCCTCGATCCCCTGACGACTCCTTCACCGGCCTCGTGCGCACGCTATACTTCGCTGATACCTTCCTTTCAGACAGCTCCCACAACACACCATCTCTGTGGGCAGGGACCAATGGGGGATCAGTATTCGCCTACCAGCTCCGCCTACCGCCTGTGGAACGCAGAGGAGAGGACCCTGTCACAGCACACCCTGCTAAGGAGATCCAGTTGATGCACCGTGCTCCAGTAGTGGGCATCTTGGTGTTGGACGGCCATGGTTCCCCTCTGCCTGAGCCCCTGGAGGTGGCACACGACCTGGCCCGCTCACCTGACATGCAGGGTTCACACAGCCTACTGGTTATATCAGAGGAACAGTTCAAgGTGTTCACCCTGCCTAAGGTGAGCGCCAAAATGAAGTTAAAGTTGACGGCCATTGACGGCTCACGCGTGCGCCGGGTGGGCGTGGCCTGGTTCGGGAGCACCCGCACGGACGACTACGGCGAGAGCGGCCTCACCGTCCTGACCAATCAGGGAGACCTCCACGTGGTGTCGTTGCCAGGGGTGAAATTGCAGGTCCAGTACCCCTGTATACGTAGGGAGGACGTCAGCGGCATTGCATCCTGCGTCTTCACCAAGCATGGACAGGGTTTCTACCTGATCTCTCCGTCAGAGTTTGAgcgtttctctctgtctgctcgCTGTGTGGTGGAGCCCCGGTCTCTAGTGGAGGTGTCCTCCCAGACACCCAGCAGCACTCTGCCACGGGCGCCGCCGGACGGGGCCTCTGTGGAACGCAGAAATTCCACGAGGGATGGCGCGGCTGTGCTTCAGGAGATCCAGAAGTCTCTAGAAGTAGATCAGACGACGTTCCTGGAGAATGGGACGAGTGCTCTCGCTGGAGGGAAGGTGCTGAGCAGTTGAGACTGAGCTGGTCATCCTTGTGCCTGAGACATCGTGGAGTCTGCCTAGTGACTCCTGCCGCGCGACTCCTGACTCCTGCCTCGCAGTCTACACaaacactactattactaccactactgaccacTTGGGCCCCTAGCCCCCGGAGAGACTCACCCCTGACCCCTAGCATGAGAGGCTGAACCCTGGCCCCTAACCCCAAAGACTGACTCACTGGCTTTGtcacaaatggcactctattccccaagTAGGGCACTGCTTTTAACCAAAGCCCATAAAGGGGGGTTGGTGTAGTGTATgaggaacagggtgtcatttgaggCCCACCGCTATGGAAGGACCACCGTCTGTGCCTAGGGACCAaccactgtactgtaatacccctGCTACGCTTGGTACCTCTACACCTGCCACACATTAGTAATGATTGTATGGTCATTCCGCTGACGCGCTTATCCAAAGCCACTTACAGTTCTCACACACAAGACATACTTGCATTAAACACACCCTACTCACTCATCCACCCCTTCCTCACGTTCCCTCCTCATCCCGACACCAGGCATTCAGCCTTTCACCCTTGAACTCAAGCTGACCTGTGAAACTCTGATTTGTCCAGTAGCAGCCTTGCTCTGCACATCCTCGCTTGCCTTAGTCTCCTAGAGAGAGACGCATATGGGGGAGTGGgaagatatagagaggagggggggatggacttgttttttttattcctATGATTCTTTTATTTGTAATGTAATTTTACCTGTGATTTTGTAACCTTTTTGTTTTGATTCTGTGTAATTATTGGAGATGTAAAATCTAGCTGGATGGGAAAAACTGTACAAGGGAgccaaaaatgttttttgttgttttttttatgctGACAAATCATCAAATTTATTCTGGCACTCCAAACAAGGCATTGTTTTGAGTGCGAGAGCAACATGGAGTATCTGTGGAATCCGTACTGTTAATTTTGAACCACACAAGGTGGTAGACCACCAAGCCTGGTAGCCAGACCTATTGTTGCTTTAGCCAACTCAGAAACACATCTGACTACCAGACTAGCAGTATAAGACCACTGTGCCGTAAAATGTCTCCCCAAGCTTTTGTTGCCAACTGAcctccctccttacctctcctACCGTCCGCGCATTAATGTGTAATAACCAGTTATAACTTGACGTAGGTATTTGTCCTGTGTAGCACATGACGCTACAACTTTCTATGGTGGCTTggtttttaaaatgttataatGTAAACCCTTTTTTTGAACACAGCAATGAGTAATGTTATTTAGGAATGTAATTTTAAGATATTGTAGTCAAATGTTTAATATATATGTACTATATGATTCTCTGCCTGTTAACGGTTAGGTGTGTTTTTAATGGGGGTTGGCTGCTATAGTCGGATCTCGCAACAAAATATTTTGGTACTGTTTCTTGAAATGCTGGGTATTTTAGCATTTCTGTGGTCTCTAGAATATATTTTTGTAGTGAATCATGGAGTATGAGAACCCTACTTTTTTTGATTGATAACTTTCACACTACATAATGTCCTGCTGGAAAATGAATACATGTTTTTCACAAGA

Function

NR:

description
lethal(2) giant larvae protein homolog 2-like isoform X3

GO: NA

KEGG:

id description
K06094 LLGL; lethal(2) giant larvae protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575655.2 False 4962 mRNA 0.53 27 9335133 9359628
XM_021575656.2 True 4914 mRNA 0.53 26 9335133 9359628

Neighbor

gene id symbol gene type direction distance location
uts2r2 ogfod3 coding upstream 764353 8536386 ~ 8570780 (+)
LOC110498922 cssa28h17orf62 coding upstream 807372 8524125 ~ 8527761 (+)
LOC110498917 NA coding upstream 859828 8467537 ~ 8475305 (+)
wbp2 LOC106589470 coding upstream 906550 8418868 ~ 8428583 (+)
unk LOC106589472 coding upstream 933600 8392044 ~ 8401533 (+)
LOC110498735 LOC106589194 coding downstream 3854 9363482 ~ 9398815 (+)
LOC110498931 LOC106589451 coding downstream 41446 9401074 ~ 9430866 (+)
LOC110498932 LOC106589450 coding downstream 81017 9440645 ~ 9468339 (+)
LOC118942032 NA coding downstream 102479 9462107 ~ 9465054 (+)
LOC110499583 NA coding downstream 117234 9476862 ~ 9482299 (+)
G1660500 spata20 non-coding upstream 66457 9268177 ~ 9268676 (+)
G1660499 spata20 non-coding upstream 76342 9258191 ~ 9258791 (+)
G1660457 NA non-coding upstream 141183 9192896 ~ 9193950 (+)
G1660448 NA non-coding upstream 152107 9182803 ~ 9183026 (+)
G1660446 NA non-coding upstream 153152 9181680 ~ 9181981 (+)
G1660612 NA non-coding downstream 150689 9510317 ~ 9510536 (+)
G1660613 NA non-coding downstream 151583 9511211 ~ 9511450 (+)
G1660614 NA non-coding downstream 154718 9514346 ~ 9514597 (+)
G1660519 NA non-coding downstream 160181 9519809 ~ 9520023 (+)
G1658572 NA other upstream 1629982 7704506 ~ 7705151 (+)
wu:fj29h11 LOC106589505 other upstream 2314049 7015665 ~ 7074332 (+)
G1656720 NA other upstream 3341383 5990474 ~ 5993750 (+)
G1661477 NA other downstream 691994 10051622 ~ 10052089 (+)
G1662037 NA other downstream 1116539 10476167 ~ 10476689 (+)
LOC110499585 NA other downstream 1443056 10802684 ~ 10805251 (+)
LOC110498940 LOC106589438 other downstream 1499527 10850770 ~ 10866995 (+)
G1662536 LOC106589414 other downstream 1945182 11304810 ~ 11306183 (+)

Expression


Co-expression Network