LOC110499584


Basic Information

Item Value
gene id LOC110499584
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10038565 ~ 10041363 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002469981.2
actgtttttttcttctcctgAGATTGAGACCTCTCATTGTTCGGATTTGAAAATGCAACTATTGTAATAGAACGGGCAGCGCTCggggctgtgtgtggctgtgcgTGTGGGTGGCGgagtgagaaagacacagaggagCGCTAACCAGTAAAAGCACAGCCCCCTTCATTGTCGACACACTGTGCCAACAAGATCAAAGAGCCATTCCAAATGGAGGTCAAGAGGACTTTGAAACTTAGGTGCTAGCCAGACTAGTGATTAACTGCAATGGAAAAGTAATTGTTTGTCTGCTTTACGACAGATTGCTCAGGACTTCTCAATTTTTAACCCGGCGAAACTAGCTGAGAACTGGATTGCGGTCTTCGTGTACAAAATACTTTGAGTCGCCAGCCGAGAGAAGCAGGCCCAAGATCTTTTCTTCGAAGAGCAGGAAAGGTAACATCGCCTTAAGACTTCTGTCAATGGCAGGAAGACATTCTTACCCGGCTTCGAAGAGACCAGAAAGTCCTTCATCAACTTGTTGGGACCAACATGGTTGAGTACCTGCACCAGGCAAAGGTGACCAGACCCTACCTATTTGTGTTGGCTCTTGGGGACAATTGTCTCTGCTCACAGGTGTTTACAATCATTAGCGGACAGGCATTGGAGCAAGGTACACTTTTTGGTGCACTGGATCAGTGCTTGAAGTTCTATTATGTGTTTGATATCAACTTTCCCAGACTGTGTGCCCCAGCATGGGAATTCCTACATGCCACGGTGTATCAGCTGCCAGGCTGTTGCGagaatttttttttcttccactgAACAAGAATGTATAAGTACCTGCTCTTGTATGTAGTGGGAGTGACAGGATAATTGTTTGTGTTCCTGTGAgtttgtcacatcctgaccatagtttgctttgtatgtttgtatgttttgtttggtcaggctgtgatctgagtgggcattctatgttggatgtctagtttgtctgtttctgtgtttggcctgatatggttctcaatcagaggcaggtgttagtcgttgtctctgattgggaaccatatttaggtagcctgttttgtcattgtgggttattgtctatgtctatgttagttgcttgtgtcagcacagttcttattATAACTTCACGGTTGTTAGTCCTTTATTGTTttgtgttcagtgctttctgtaattaaaatatcatcatgaacacataccacgctgcattttggtcatCGTGATAGAACAATGGCTGGATGAGCCATGAGCGTCTCATATTCCAATGCTAATATGCTCTTAAGACTATTTATAGCTCTGTTAAATTTACTTTTAGTTTGTTTTAATGAATTTGTGCCTGCTTTTTGCCTAGTCAATGGTATGTGCTTCTTTGCTTTTAGTTCAACTACTGTTGCACACAAATCTCTATATATTTGTATGAATAATATATGACATTCTTTCTATAACAATTTATTTGAAATACAAATGTTACATTTTGAGGATTGTGAATAGTGCTTTATTTATGAAATACAGTTATTACTTAAATATTGACAGTCATTAGTCCACACAATGTTTTCCACTTGTTCTCTATGTAACAATATTTTGTGTCACATCTGtcgtaaggaggagaccaaggcgcagcgtggtaagcgtacattcttAATTTATTAAACaaatgaacactgaaacaaaataacaaacaaccGAACGGTGAAACTATAGACATgagtgctaacaggcaactacatatagacaagaacccacaaaatacccaagggaatatggtccccaatcagagacaacaataaacagctgcctctgattgggaaccaattccggccaccatagacatacaataaacctagacttacaaaaaaaCCTAGATATACAAAACCCATAGACAAGGTAAAACTaacatacccaccctagtcactccctgacctaaccaaaataaagaaaacaaagataactaaggtcagggcgtgacaattttgACCAAATGTTATTTTATGGCAAAACAGCAAGATGTGTGTGCTGTCACCTAAGATCGCTTAAGCAGTATGTGTCAGTGAATTTGAACATATATTGACTAGCTCTGACACTGTATGATCGAtagatctgtgttaataccacTGAAGACAGACAGTGTCACACTCACCAATGCTTTGTTTTTCTCAGATTGCGATCTGAGTGTGCACAGCAATTTCAGCTGAGGCTTCAGTCATGTTTGAACTGATTGGTTCATGAAATAATATCAATCAATTTTAATAATCAATCCTAGCTTTTGAAATCTTAacttatgaaataacacataattaGGCAGTTGGGCTTTGTTTCGGTGtgctatttaaaaaatatatattctttgTTCATTATTGTGGACAATTCTCTGACGTGCTGTGATGTATGTT

Function

NR:

description
uncharacterized protein LOC111191047 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002469981.2 True 2393 mRNA 0.40 3 10038565 10041363

Neighbor

gene id symbol gene type direction distance location
LOC110498736 LOC106589448 coding upstream 535777 9483623 ~ 9502788 (+)
LOC110499583 NA coding upstream 556266 9476862 ~ 9482299 (+)
LOC110498932 LOC106589450 coding upstream 570226 9440645 ~ 9468339 (+)
LOC118942032 NA coding upstream 573511 9462107 ~ 9465054 (+)
LOC110498931 LOC106589451 coding upstream 607699 9401074 ~ 9430866 (+)
LOC100305179 gna13 coding downstream 739035 10780398 ~ 10782116 (+)
LOC110499585 NA coding downstream 761364 10802684 ~ 10805251 (+)
LOC110498938 LOC106589439 coding downstream 785401 10826764 ~ 10828429 (+)
LOC110498939 LOC106589440 coding downstream 787855 10829218 ~ 10837113 (+)
LOC110498940 LOC106589438 coding downstream 809407 10850770 ~ 10866995 (+)
G1661409 NA non-coding upstream 34311 10003992 ~ 10004254 (+)
G1661390 NA non-coding upstream 45141 9993099 ~ 9993424 (+)
G1660895 NA non-coding upstream 52310 9985479 ~ 9986255 (+)
G1660686 NA non-coding upstream 371129 9664740 ~ 9667436 (+)
G1660645 NA non-coding upstream 475322 9562158 ~ 9563243 (+)
G1661489 NA non-coding downstream 17160 10058523 ~ 10058930 (+)
G1661520 NA non-coding downstream 34713 10076076 ~ 10076335 (+)
G1661588 NA non-coding downstream 76562 10117925 ~ 10118132 (+)
G1661605 NA non-coding downstream 91278 10132641 ~ 10132983 (+)
G1661612 NA non-coding downstream 97631 10138994 ~ 10139213 (+)
LOC110498922 cssa28h17orf62 other upstream 1511045 8524125 ~ 8527761 (+)
unk LOC106589472 other upstream 1643089 8392044 ~ 8401533 (+)
G1658572 NA other upstream 2333414 7704506 ~ 7705151 (+)
wu:fj29h11 LOC106589505 other upstream 3017481 7015665 ~ 7074332 (+)
G1656720 NA other upstream 4044815 5990474 ~ 5993750 (+)
G1661477 NA other downstream 10259 10051622 ~ 10052089 (+)
G1662037 NA other downstream 434804 10476167 ~ 10476689 (+)
G1662536 LOC106589414 other downstream 1263447 11304810 ~ 11306183 (+)

Expression


Co-expression Network