LOC110498938 (LOC106589439)


Basic Information

Item Value
gene id LOC110498938
gene name LOC106589439
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10826764 ~ 10828429 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575673.2
ACGAAGCAACCGCATCTCTTCCGTATTCAAACAACATCAGTGAAAACATGGACGTGGAGAGTAGTATTTGTCAGGGAAACGAGGATTCTGGTCCCAGTGAGTCCGGCATTAAGATCCCGGACAGGATGCTTAAACGAGAACAGGATAGGCTTGAGGacgtggagagaaagaaagaagcgAAAAATAGCCAGTCTGTCACGGAGGAGAAGAGTGGGTTCTTCACCGCGACGTTCAGTAGTGAAAGGGCAACAATCGAGGAGTTACTGGAGGGCTGCTCGGGGGCTACTGACCGCGCCCTGGCCACTCAAACCTTGGAGAAAGTGACGACTAAAACACAGTTCCTCCAGAAGTTTCTAAACGATAGCATGGTGTTTTTACCGCAGTACGAGCTGAGACAGGCCCAGGCGGCGCTCCAGAAACTACAGAACTCTCTGGCTGAGAAGAGAGACGAGATTCTCCCCAAGAAGAAGTTCGCCTTTAGGTCGCGCGCAGCAAATACACCCAAAGTAGACCCACCAGCTCCACCTGTAACGCCTAAGGATTCTGGCCGAACTAAAGTGGACGGAGCCATAAGCCCCCCAGAGCAGTGTGGCTTCTCCCACTTTGAGGCCCAGGTGCTGACCAAGTCCGGGGCGGAGATTAAACAACAGGATGTTCTACTGACCCACCTGACCAACTGCAAGGTCAGACTTCTGGGCTCCCCCAGCACCATCCACATCAAACATGTCCAGAACTGTGAAATCTTCTCTGGGCCAGTGTCCAGCTCTGTGTTTGTGGACCACTGCACCGGCAGCACCCTCTCCTTCCCATGCCAGCAACTACGGACTCACCACACCACCGACACACAGGTCTATCTGCATGTCACCAGCCGCGCCATCATAGAGGACTGCCAAGGGGTGCGCTTTGCCCCCTTTGCCTGGTCCTACCCGGGTCTGGACCAGGACTTCAAGGTGTCTGGTCTGGACCGGGAGAGGAACAACTGGAACCAGGTGGATGATTTTAACTGGCTGGCCTTAGGTACCCAATCTCCTAACTGGTCTGTCATTCCAGAAACTGAGAGAAGAACAGAGTGGGACTCCTAGAGACATTAGTATACAAAGAGCCTGTCAATCAAACAAATGAAGCTCTTATTTTCATTCAGCCCTGATGTGACACAGCCTTACTTGACTTTGCTTTTCATGCTAATGAGTTCCATAGTACAGTTGTTCCATAGATGTCCTGACAGGATTACCCATTAAATATTGGGTAATATTCAGTAGCGTGCTGCCTGAAATCTTTTTCTTCACTGGGAGGAAAAAGTTGCTGCATTTGTTTTCTCATGACTATACGATGAGCAATAAACAGAATGTCAACCACGTACTGTAACACAGCTTTTAATCAGGAAGAACAATCTTAGTCCTTAAATGCCATCTTATGTTTACAAACAGCACTTGTTCTGTCATTCTCCCATCTATAAAGCACTAAATACCTATGTTCTTCTGACTAAGTGGTCTGGAGTAAATACTAGATGTGAATAAAGGGTTTGGCTGACATCAACCAA

Function

NR:

description
tubulin-specific chaperone C-like

GO:

id name namespace
GO:0071840 cellular component organization or biogenesis biological_process
GO:0009987 cellular process biological_process

KEGG:

id description
K21766 TBCC; tubulin-specific chaperone C

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575673.2 True 1540 mRNA 0.49 2 10826764 10828429

Neighbor

gene id symbol gene type direction distance location
LOC110499585 NA coding upstream 23091 10802684 ~ 10805251 (+)
LOC100305179 gna13 coding upstream 44648 10780398 ~ 10782116 (+)
LOC110499584 NA coding upstream 785401 10038565 ~ 10041363 (+)
LOC110498736 LOC106589448 coding upstream 1323976 9483623 ~ 9502788 (+)
LOC110499583 NA coding upstream 1344465 9476862 ~ 9482299 (+)
LOC110498939 LOC106589440 coding downstream 789 10829218 ~ 10837113 (+)
LOC110498940 LOC106589438 coding downstream 22341 10850770 ~ 10866995 (+)
LOC110498943 LOC106589437 coding downstream 42671 10871100 ~ 10874293 (+)
syt15 LOC106589230 coding downstream 63384 10891813 ~ 10895363 (+)
LOC110498948 LOC106589430 coding downstream 120403 10948832 ~ 10987833 (+)
G1662363 rgs9 non-coding upstream 57893 10767434 ~ 10768871 (+)
G1662362 NA non-coding upstream 61738 10758977 ~ 10765026 (+)
G1662359 NA non-coding upstream 78420 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 95942 10730565 ~ 10730822 (+)
G1662355 NA non-coding upstream 99663 10722746 ~ 10727101 (+)
G1662385 NA non-coding downstream 54143 10882572 ~ 10884264 (+)
G1662371 NA non-coding downstream 162022 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 240459 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 241075 11069504 ~ 11070255 (+)
G1662518 NA non-coding downstream 242373 11070802 ~ 11113378 (+)
G1662037 NA other upstream 350075 10476167 ~ 10476689 (+)
G1661477 NA other upstream 774675 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2299244 8524125 ~ 8527761 (+)
unk LOC106589472 other upstream 2431288 8392044 ~ 8401533 (+)
G1662536 LOC106589414 other downstream 476381 11304810 ~ 11306183 (+)
LOC110498741 LOC106589412 other downstream 544438 11372725 ~ 11404820 (+)
LOC110498970 cript other downstream 721367 11549728 ~ 11553514 (+)
LOC110498999 LOC106589380 other downstream 1993250 12816635 ~ 12836089 (+)

Expression


Co-expression Network