LOC110498939 (LOC106589440)


Basic Information

Item Value
gene id LOC110498939
gene name LOC106589440
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048584.1
NCBI id CM023238.2
chromosome length 46616863
location 10829218 ~ 10837113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021575674.2
ctggggaacgtaacaggtGGTTTCCCGTACACAGATTAAGCCCAGTCCTCAAATTCCTAGGAATCTCAATTGAAAATGCTGTTTAGTCCAGGACTTGTCTTAATCTGTGCATGCCCCTAATGGTTTCTTCCCCTTTCCACATCCTGTCCCCACTCTTCCCATGAGATAGCTAACTCATTCGAGGTCAATATCATTCTGCGGTAGTGACAGTACGAATCTCCGCCCTCGGGTACACTAACACCAGTATGCTCTTCTGGTTTCTCTGATCTCTGGCTCTGTCACAAGTTCTGCCAACTACTGAAGCTGTCATCAGGTCTGCTGGCCTGTTGTGCGTCCCAGTGTAGCTCACATGTACACTAGTGTATCATGTCGTTAATTGAATGCACTGACAACCACACATCTCCCTGCTCTCATATACTGTACACATCACAATCCTAACTTTGCTGTGCAGTGAAGAAGCTCCCATTAGAAGTTAGTTATTGGTCTACCAAACTGCCATCAGCATACACTGATAGTTCAGTTAGTGTAGACACAAACACCTATAGCTAAATCTGCCTGCTTCTTTACTACAGGCGAGAGACTGGCAGGTTGTTGATATTGACTGCTGAGTGTAGGTGGAGCTAAGTGGGTCATGGAGAGTCTTACATGGTTTTTGGATGGTTTACTGAAACATCTTAGGTGACTACACTGTAAACTTTCTTCCTCGCCTGAACCCAGGGACCCCTTCCAAAAGTGCAGCATGGCGTTGTTCCACATCTCCACTCTCCGTCAACCGTTAACTGTCCTTATTAATGGCCCCCGGTGCATTCGATCAGGGTGACAATGACCATGTGAGCATTCAAACCAATTATGTCTCCTGGCAACAGCTTACAGCCAGGCTCATCTTCTGGAGAGGGATTTTTGTAAATGGGTTCAGGCTGCTTACAGGGGATTATCATGACGCACCTCCCCTCCGCCTGGAATCTGGAGGATCTTCCTCAATCCTCTTCCAACCAGCGAAAGGAACATCACGATTAGCCTCACCTGTTGATTTTCCCAACGTTTTTGGAGGGAAAGTTTAGAACTAAGGCAAGGGGACAAGTGTGACCCTGTGTTCTGTCATCCGTCTGGGTGAGTTTTCTTTGTAGGGTCTGGCCactatgggagaggagagggtcctGAAGGAATAACCGCactcctctttctttacctctgcTCCTTCTCTTTGGGATGGATTACAGATCATTGCCTGAGCTGACAGTCCTGCACTGCTGGAtgagctgcaggagagactgagagacgaAGAGAACGGCTGAAGCCACCTTACAGGGAATCAACGGTTCAAAACGCTTAACGAGAACAGCTGAAACTCTACTGGCTGGGGCATCCAGAAGAAGGACCCGACCGTAGAGCTATATCTCATCTCAGTAGTGTATTTTCCTTGTGTATAGGTAAGAAATATCCCTAGGTTGCCACCATGGCACTAATGGTGGTCAAGTTTGACCTAAAGAAGCGGGTGAAGCTAGCCCAGTTCCTATGGCTGATGTACTGGTTCTCAGTGATGGCAGGCGTGCTCGTCTTCAGCATGGGGCTGTTCTTTAAGATCGAGCTGCGTAAGCGCTCGGAGATGATGGATAACAACGAGAGCCACTTCGTTCCTAACTTACTAATTGCCGTGGGGCTGCTGGCCTGTGGGATCAACGCCTTGGGAGGCAAGATCTGCTACGACTCCTTGGACCCTATCAAGTTCTCCAGGTGGAAGCCTATGCTCAAACCCTTCCTAGTCTCCTGTGTGGCTTTCAATTGTCTCCTGGTGCTGACGGCTCTGCTCTGCTTCCTGATGAGGATCCCTCTCCAGTTCACGCTTGCCGAGGGCCTGAAGAACGCACTGAGGTTCTACAAGGACACAGACACGCCGGGACGCTGCTACATGAAGAGGACTTTGGACCAGATGCAGATTGAGTTCCGTTGCTGCGGCAACAACAACTTCAGGGACTGGTTCGAGATCCAGTGGGTCAGCAACCGCTACCTGGACTTCAGCGCCAAGGAAGTTAAAGATCGTATCGGCAGCAACGTGGATGGGAAGTACCTGATGGATGCTGTTCCATTCAGCTGCTGTAACCCCGGCTCCCCTCGGCCCTGCATCCAGTACCAGGTGACCAACAACACGGCCCACTACTCCTACGACCACCACACCGAGGACCTGAACATCTGGAAACGGGGCTGCCGCGACGCACTGATATCCTACTACGGAGGCATGATGAACACCATAGGAGCCCTGGTGCTACTGGTTGCTATTCTGGAGGTTATTGTGATGATCGGCCTCCAGTACGTGAACACCTCCCAGTGCAACCTGGCCAACCCAGAAGACCCAGAGAGTGAAAGCGAAGGCTGGATCCTGGAGAAGACGGTGAAGGAGACGTTTACTGACATCATGGACAAGATGAAAGCCATGAGCAAGGGTAACGCAGTGGAGGAGGGCGGAGTGGATGGTGTTGCCACGGTGAGCTGATCACGATATGCCCACACAAACTGAGACCACTCCCACcaaagggaagagaggaagattgACCACCTCCTTTGCATTTATGACAcaacatacagacatacacaaaTATGCGCACAACACACACGTTTCTGGCCATCTGAAGGGAAAACTAAAATGGACAGATCCTGAGTACATGCCAGCACACACACGGATATTTTGAATGCATGAATGTATGTGTAAGTTATATTATAACCAATTGATAAATTGACTTTAcaatatgcccccccccccccacacacacacacacactcacaatacaCTTTTTCTAAACCTCATGATTTTTCAACGCACACACTCCCTCCAACCCCAGCTTTGTTAATCTTCCAAGCAGTTCCCATTTGATGGGAtactctctgtgtgttttctaaCATTCTGTATAATTCTGCTCTATTTCATGTTCATATTTTACAACTTTATTTGTACCCCTTTTTTTACAAAATGAGAGGAAAAACATCAAAACACTATCCACTGTCATGAAAATGCATAATGTCAGATATTTGCATTGTATTgagaataatatatatatattaacaggTTAAGAGTAAGGTCAGGAGAGCAGGTATGTTGCGTTTTAAGGATGGTGTGGGGCTGGTGGTTGCTACGCGACCCTCCAGCCCAGAAAGGAGGTTAAAGTGGAAAGGTTAATTCATCGCCCAAGGAGCAGAGAGTTTTATCTTAACATATTTGGACCCACCTGTAGAGCACTTTTTATATTAGCAAATTCCAAAGAAATGGACTGAAACACCTCAGACATCACCTCTTTAAAGTCCTTCCTCTCCTACCATTACcttgagggatggaggggggctgGAAACTCCTGGGGTAGGGGAGGTGGAAACATTTCAACTTAACCTGATGGTGTTGAAGTTTGGGGTGCGCTGCTGGAGGATTGGAGGGGCTATAGGAGACGAGGCACGGGGGAAAGTGGTAGAGGTGAACCAGGGGTGACCCCAAAAACTTGAGGAGGACATTTGAGATTGGCAGCTAAACCCCTGATCTCCAACCCCTGAACTCTGACCCCAGCCCCTGCTCTGTGACATCACTCAGCAGGTCCAATCAGCATTTCTCTTATTGGACCGTCGAGAGTTACTGTATATATCACACTCACTAAGTTCCTGTACATACCTCACTCATAGGCCAACGCCCGTGCTACTGTTATCTTTGTAAATAGTCTAGTATTGATACATAACTTTTTTTAAACAATGTAATTaatataaattattttatttactttaaaGAAAATGTGTTTTGCCATGGGAAATCAATCTGGTTTTCTTTCTGTATGTTGTGTAGAAAGATGATAAAATCATTGTGTACATTTGAATAAAGGATGTTagccctg

Function

NR:

description
peripherin-2-like

GO: NA

KEGG:

id description
K17343 PRPH2, TSPAN22; peripherin-2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021575674.2 True 3869 mRNA 0.47 3 10829218 10837113

Neighbor

gene id symbol gene type direction distance location
LOC110498938 LOC106589439 coding upstream 789 10826764 ~ 10828429 (+)
LOC110499585 NA coding upstream 25545 10802684 ~ 10805251 (+)
LOC100305179 gna13 coding upstream 47102 10780398 ~ 10782116 (+)
LOC110499584 NA coding upstream 787855 10038565 ~ 10041363 (+)
LOC110498736 LOC106589448 coding upstream 1326430 9483623 ~ 9502788 (+)
LOC110498940 LOC106589438 coding downstream 13657 10850770 ~ 10866995 (+)
LOC110498943 LOC106589437 coding downstream 33987 10871100 ~ 10874293 (+)
syt15 LOC106589230 coding downstream 54700 10891813 ~ 10895363 (+)
LOC110498948 LOC106589430 coding downstream 111719 10948832 ~ 10987833 (+)
gdh03 gdh03 coding downstream 250009 11087122 ~ 11231541 (+)
G1662363 rgs9 non-coding upstream 60347 10767434 ~ 10768871 (+)
G1662362 NA non-coding upstream 64192 10758977 ~ 10765026 (+)
G1662359 NA non-coding upstream 80874 10732103 ~ 10748344 (+)
G1662358 NA non-coding upstream 98396 10730565 ~ 10730822 (+)
G1662355 NA non-coding upstream 102117 10722746 ~ 10727101 (+)
G1662385 NA non-coding downstream 45459 10882572 ~ 10884264 (+)
G1662371 NA non-coding downstream 153338 10990451 ~ 10994307 (+)
G1662391 NA non-coding downstream 231775 11068888 ~ 11069323 (+)
G1662383 NA non-coding downstream 232391 11069504 ~ 11070255 (+)
G1662518 NA non-coding downstream 233689 11070802 ~ 11113378 (+)
G1662037 NA other upstream 352529 10476167 ~ 10476689 (+)
G1661477 NA other upstream 777129 10051622 ~ 10052089 (+)
LOC110498922 cssa28h17orf62 other upstream 2301698 8524125 ~ 8527761 (+)
unk LOC106589472 other upstream 2433742 8392044 ~ 8401533 (+)
G1662536 LOC106589414 other downstream 467697 11304810 ~ 11306183 (+)
LOC110498741 LOC106589412 other downstream 535754 11372725 ~ 11404820 (+)
LOC110498970 cript other downstream 712683 11549728 ~ 11553514 (+)
LOC110498999 LOC106589380 other downstream 1984566 12816635 ~ 12836089 (+)

Expression


Co-expression Network